Mercurial > repos > recetox > recetox_aplcms_recover_weaker_signals

comparison recetox_aplcms_recover_weaker_signals.xml @ 9:a9bb2ccc53de draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
author recetox
date Wed, 11 Oct 2023 11:18:27 +0000
parents c3d4b82c7e5d
children d7f5878a98c3
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8:99d118321d5f 9:a9bb2ccc53de
1 <tool id="recetox_aplcms_recover_weaker_signals" name="recetox-aplcms - recover weaker signals" version="@TOOL_VERSION@+galaxy2" profile="21.09"> 1 <tool id="recetox_aplcms_recover_weaker_signals" name="recetox-aplcms - recover weaker signals" version="@TOOL_VERSION@+galaxy3" profile="21.09">
2 <description>recover weaker signals from raw data using an aligned feature table</description> 2 <description>recover weaker signals from raw data using an aligned feature table</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <import>help.xml</import> 5 <import>help.xml</import>
6 </macros> 6 </macros>
7 <expand macro="annotation"/>
7 <edam_operations> 8 <edam_operations>
8 <edam_operation>operation_3215</edam_operation> 9 <edam_operation>operation_3215</edam_operation>
9 <edam_operation>operation_3799</edam_operation> 10 <edam_operation>operation_3799</edam_operation>
10 </edam_operations> 11 </edam_operations>
11 <expand macro="annotation"/> 12 <expand macro="refs"/>
12 <expand macro="creator"/> 13 <expand macro="creator"/>
13 <expand macro="requirements"/> 14 <expand macro="requirements"/>
14 15
15 <command detect_errors="aggressive"><![CDATA[ 16 <command detect_errors="aggressive"><![CDATA[
16 python '${__tool_directory__}/mzml_id_getter.py' '$input_file'; 17 python '${__tool_directory__}/mzml_id_getter.py' '$input_file';
105 <outputs> 106 <outputs>
106 <data label="${($input_file.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> 107 <data label="${($input_file.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" />
107 </outputs> 108 </outputs>
108 109
109 <tests> 110 <tests>
110 111 <test expect_failure="true" />
111 </tests> 112 </tests>
112 113
113 <help> 114 <help>
114 <![CDATA[ 115 <![CDATA[
115 @RECOVER_WEAKER_SIGNALS_HELP@ 116 @RECOVER_WEAKER_SIGNALS_HELP@