Mercurial > repos > recetox > recetox_aplcms_recover_weaker_signals

comparison macros.xml @ 11:d7f5878a98c3 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b88eaca14b030fc0023989f3c83479e4975d172a
author recetox
date Thu, 01 Aug 2024 10:57:41 +0000
parents a9bb2ccc53de
children 24278c6b6d1c
comparison
equal deleted inserted replaced
10:e0536ff73f36 11:d7f5878a98c3
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.12.0</token> 2 <token name="@TOOL_VERSION@">0.13.2</token>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement> 5 <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement>
6 <requirement type="package" version="2.5.2">pymzml</requirement> 6 <requirement type="package" version="2.5.2">pymzml</requirement>
7 </requirements> 7 </requirements>
64 help="The m/z tolerance level for the grouping of data points. This value is expressed as the fraction of the m/z value. 64 help="The m/z tolerance level for the grouping of data points. This value is expressed as the fraction of the m/z value.
65 This value, multiplied by the m/z value, becomes the cutoff level. 65 This value, multiplied by the m/z value, becomes the cutoff level.
66 The recommended value is the machine's nominal accuracy level (e.g. for FTMS, it is 10)." /> 66 The recommended value is the machine's nominal accuracy level (e.g. for FTMS, it is 10)." />
67 <param name="baseline_correct" type="float" value="0" label="Baseline correction [unit of signal intensity]" 67 <param name="baseline_correct" type="float" value="0" label="Baseline correction [unit of signal intensity]"
68 help="After grouping the observations, the highest intensity in each group is found. If the highest is lower than this value, the entire group will be deleted." /> 68 help="After grouping the observations, the highest intensity in each group is found. If the highest is lower than this value, the entire group will be deleted." />
69 <param name="grouping_threshold" type="float" min="0" value="Inf" label="Grouping Threshold [unit corresponds to the retention time]"
70 help="Maximum empty space between section of the chromatogram for splitting EICs" />
69 <param name="intensity_weighted" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Weight intensity" 71 <param name="intensity_weighted" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Weight intensity"
70 help="Whether to weight the local density by signal intensities in initial peak detection." /> 72 help="Whether to weight the local density by signal intensities in initial peak detection." />
71 </xml> 73 </xml>
72 74
73 <xml name="generate_feature_table_params"> 75 <xml name="generate_feature_table_params">