Mercurial > repos > recetox > recetox_aplcms_recover_weaker_signals
view mzml_id_getter.py @ 4:755ff0afaaff draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 724ecb1b81ebd8a67488b8a9397177b2ff0357db
author | recetox |
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date | Wed, 24 May 2023 14:50:25 +0000 |
parents | 472dc85ce7c5 |
children |
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#!/usr/bin/env python import argparse import sys from pymzml.run import Reader def main(argv): parser = argparse.ArgumentParser(description='Get run ID from an mzML file.') parser.add_argument('mzml_file', help='Path to an mzML file to get run ID from.') args = parser.parse_args() mzml = Reader(args.mzml_file) id = mzml.info['run_id'] if id is not None: with open("sample_name.txt", mode='x') as f: f.write(id) if __name__ == '__main__': main(sys.argv[1:])