Mercurial > repos > recetox > recetox_aplcms_two_step_hybrid

comparison macros.xml @ 1:87b669bdb51a draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 19de0924a65bc65cbbf7c1fc17e9b5348305f95c
author recetox
date Fri, 10 Jun 2022 10:15:47 +0000
parents c67f0eb6a909
children
comparison
equal deleted inserted replaced
0:c67f0eb6a909 1:87b669bdb51a
2 <token name="@TOOL_VERSION@">0.9.4</token> 2 <token name="@TOOL_VERSION@">0.9.4</token>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="4.1.0">r-base</requirement> 5 <requirement type="package" version="4.1.0">r-base</requirement>
6 <requirement type="package" version="4.0.1">r-arrow</requirement> 6 <requirement type="package" version="4.0.1">r-arrow</requirement>
7 <requirement type="package" version="0.9.4">r-recetox-aplcms</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement>
8 <requirement type="package" version="1.0.7">r-dplyr</requirement> 8 <requirement type="package" version="1.0.7">r-dplyr</requirement>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 11
12 <xml name="creator"> 12 <xml name="creator">
13 <creator> 13 <creator>
14 <yield /> 14 <person
15 givenName="Maksym"
16 familyName="Skoryk"
17 url="https://github.com/maximskorik"
18 identifier="0000-0003-2056-8018" />
19 <person
20 givenName="Matej"
21 familyName="Troják"
22 url="https://github.com/xtrojak"
23 identifier="0000-0003-0841-2707" />
15 <person 24 <person
16 givenName="Martin" 25 givenName="Martin"
17 familyName="Čech" 26 familyName="Čech"
18 url="https://github.com/martenson" 27 url="https://github.com/martenson"
19 identifier="0000-0002-9318-1781" /> 28 identifier="0000-0002-9318-1781" />
159 <param name="batch_align_chr_tol" type="float" min="0" value="50.0" 168 <param name="batch_align_chr_tol" type="float" min="0" value="50.0"
160 label="batch_align_chr_tol" 169 label="batch_align_chr_tol"
161 help="The retention time tolerance level for peak alignment within batch." /> 170 help="The retention time tolerance level for peak alignment within batch." />
162 </section> 171 </section>
163 </xml> 172 </xml>
173
174 <xml name="mz_tol_macro">
175 <param name="mz_tol" type="float" value="1e-05" label="mz_tol"
176 help="The m/z tolerance level for the grouping of data points. This value is expressed as the
177 fraction of the m/z value. This value, multiplied by the m/z value, becomes the cutoff level.
178 The recommended value is the machine's nominal accuracy level. Divide the ppm value by 1e6.
179 For FTMS, 1e-5 is recommended." />
180 </xml>
181
164 <xml name="output_format"> 182 <xml name="output_format">
165 <section name="output_format" title="Output Format"> 183 <section name="output_format" title="Output Format">
166 <param name="out_format" type="boolean" checked="false" truevalue="recetox" falsevalue="original" label="Use custom RECETOX output format?" /> 184 <param name="out_format" type="boolean" checked="false" truevalue="recetox" falsevalue="original" label="Use custom RECETOX output format?" />
167 </section> 185 </section>
168 </xml> 186 </xml>
169 187
170 <xml name="unsupervised_outputs"> 188 <xml name="unsupervised_outputs">
171 <data name="recovered_feature_sample_table" format="parquet" label="${tool.name} recovered_feature_sample_table on ${on_string}" /> 189 <data name="recovered_feature_sample_table" format="parquet" label="${tool.name} recovered_feature_sample_table on ${on_string}" />
172 <data name="aligned_feature_sample_table" format="parquet" label="${tool.name} aligned_feature_sample_table on ${on_string}" hidden="true" /> 190 <data name="aligned_feature_sample_table" format="parquet" label="${tool.name} aligned_feature_sample_table on ${on_string}" hidden="true" />
173 <data name="updated_known_table" format="parquet" label="${tool.name} updated_known_table on ${on_string}"/>
174 <yield /> 191 <yield />
175 </xml> 192 </xml>
176 193
177 <xml name="citations"> 194 <xml name="citations">
178 <citations> 195 <citations>