# HG changeset patch
# User recetox
# Date 1755180069 0
# Node ID 984d5fa7acf5f2712472496738a7ba5981345d15
# Parent  af25aa61c6117518693ccc56aa827e753a72bb55
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/riassigner commit 059cad0b3f5f7067d0ca577bfe7e29bfca8af6b5

diff -r af25aa61c611 -r 984d5fa7acf5 riassigner.xml
--- a/riassigner.xml	Tue May 07 12:25:30 2024 +0000
+++ b/riassigner.xml	Thu Aug 14 14:01:09 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="riassigner" name="RIAssigner" version="@TOOL_VERSION@+galaxy0" profile="21.09">
+<tool id="riassigner" name="RIAssigner" version="@TOOL_VERSION@+galaxy1" profile="21.09">
     <description>compute retention indices</description>
     <macros>
         <import>macros.xml</import>
@@ -55,7 +55,7 @@
     </inputs>
 
     <outputs>
-        <data label="RI using $method of ${query_section.query.element_identifier}" name="output" format="tsv"
+        <data label="${query_section.query.element_identifier} with RI" name="output" format="tsv"
               metadata_source="query">
             <change_format>
                 <when input="query_section.query.ext" value="msp" format="msp" />
@@ -65,10 +65,14 @@
 
     <tests>
         <test>
-            <param name="query" value="aplcms_aligned_peaks.csv" ftype="csv"/>
-            <param name="query_rt_units" value="seconds"/>
-            <param name="reference" value="Alkanes_20210325.csv" ftype="csv"/>
-            <param name="reference_rt_units" value="seconds"/>
+            <section name="query_section">
+                <param name="query" value="aplcms_aligned_peaks.csv" ftype="csv"/>
+                <param name="query_rt_units" value="seconds"/>
+            </section>
+            <section name="reference_section">
+                <param name="reference" value="Alkanes_20210325.csv" ftype="csv"/>
+                <param name="reference_rt_units" value="seconds"/>
+            </section>
             <param name="method" value="kovats"/>
             <output name="output" file="results.tsv" ftype="tsv"/>
         </test>