Mercurial > repos > recetox > table_pandas_arithmetics
diff table_pandas_arithmetics.xml @ 0:e6d5fee8c7a6 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/tables commit d0ff40eb2b536fec6c973c3a9ea8e7f31cd9a0d6
| author | recetox |
|---|---|
| date | Wed, 29 Jan 2025 15:35:42 +0000 |
| parents | |
| children | d4bacc06365e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/table_pandas_arithmetics.xml Wed Jan 29 15:35:42 2025 +0000 @@ -0,0 +1,72 @@ +<tool id="table_pandas_arithmetics" name="table arithmetics" version="@PANDAS_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT"> + <description>perform arithmetic operations on a dataframe column</description> + <macros> + <import>macros.xml</import> + <token name="@VERSION_SUFFIX@">0</token> + </macros> + <requirements> + <expand macro="requirement_pandas_pyarrow"/> + </requirements> + <required_files> + <include path="table_pandas_arithmetics.py" /> + <include path="utils.py" /> + </required_files> + <expand macro="creator" /> + <command detect_errors="exit_code"><![CDATA[ + python3 '$__tool_directory__/table_pandas_arithmetics.py' + --input_dataset '$input_dataset' '$input_dataset.ext' + --column '$column' + --operation '$operation' + --operand '$operand' + --output_dataset '$output_dataset' '$output_dataset.ext' + ]]></command> + <inputs> + <param name="input_dataset" type="data" format="csv,tsv,tabular,parquet" label="Input Dataset" help="The input dataset in CSV, TSV, tabular, or Parquet format."/> + <param name="column" type="data_column" data_ref="input_dataset" use_header_names="true" label="Column" help="The column from the dataset to perform the arithmetic operation on."/> + <param name="operation" type="select" label="Arithmetic Operation" help="The arithmetic operation to perform on the selected column. Choose from Multiply, Subtract, Divide, Add, or Power."> + <option value="mul">Multiply</option> + <option value="sub">Subtract</option> + <option value="div">Divide</option> + <option value="add">Add</option> + <option value="pow">Power</option> + </param> + <param name="operand" type="float" label="Operand" help="The operand value to use in the arithmetic operation. This value will be applied to each element in the selected column."/> + </inputs> + <outputs> + <data name="output_dataset" format_source="input_dataset" label="${tool.name} on ${on_string}"> + <change_format> + <when input="input_dataset.ext" value="tsv" format="tabular" /> + </change_format> + </data> + </outputs> + <tests> + <test> + <param name="input_dataset" value="query.tabular" ftype="tabular"/> + <param name="column" value="3"/> + <param name="operation" value="div"/> + <param name="operand" value="100"/> + <output name="output_dataset" file="arithmetics/query_divide_ri.tabular" ftype="tabular"/> + </test> + </tests> + <help><![CDATA[ +This tool performs arithmetic operations on a specified column of a dataframe. +Supported operations are: multiply, subtract, divide, add, and power. + +Inputs +------ + +- **Input Dataset**: The input dataset in CSV, TSV, tabular, or Parquet format. +- **Column**: The column from the dataset to perform the arithmetic operation on. Select the column by its header name. +- **Arithmetic Operation**: The arithmetic operation to perform on the selected column. Choose from Multiply, Subtract, Divide, Add, or Power. +- **Operand**: The operand value to use in the arithmetic operation. This value will be applied to each element in the selected column. + +Outputs +------- + +- **Output Dataset**: The output dataset with the arithmetic operation applied to the specified column. + ]]></help> + <citations> + <citation type="doi">10.5281/zenodo.3509134</citation> + <citation type="doi">10.25080/Majora-92bf1922-00a</citation> + </citations> +</tool> \ No newline at end of file
