Mercurial > repos > recetox > waveica
diff waveica.xml @ 4:425c0494ec2d draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit 84de3bc96ad2859d87c70ba94d8ceb0b2bc2a0da
| author | recetox |
|---|---|
| date | Tue, 07 May 2024 12:49:20 +0000 |
| parents | dbbedb14b44c |
| children | e424fa636281 |
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--- a/waveica.xml Thu Oct 12 13:45:41 2023 +0000 +++ b/waveica.xml Tue May 07 12:49:20 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy4" python_template_version="3.5"> +<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy5" profile="21.09"> <description>removal of batch effects for untargeted metabolomics data</description> <macros> <import>macros.xml</import> @@ -103,7 +103,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.csv"/> + <output name="normalized_data" file="normalized_data.tsv" ftype="tsv"/> </test> <test><!-- TEST 2 --> <param name="data" value="input_data.tsv" ftype="tsv"/> @@ -114,7 +114,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.tsv"/> + <output name="normalized_data" file="normalized_data.tsv" ftype="tsv"/> </test> <test><!-- TEST 3 --> <param name="data" value="input_data.parquet" ftype="parquet"/> @@ -125,7 +125,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.parquet"/> + <output name="normalized_data" file="normalized_data.parquet" ftype="parquet"/> </test> <test><!-- TEST 4 --> <param name="input_choice" value="2"/> @@ -138,7 +138,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.csv"/> + <output name="normalized_data" file="normalized_data.tsv" ftype="tsv"/> </test> <test><!-- TEST 5 --> <param name="input_choice" value="2"/> @@ -151,7 +151,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.tsv"/> + <output name="normalized_data" file="normalized_data.tsv" ftype="tsv"/> </test> <test><!-- TEST 6 --> <param name="input_choice" value="2"/> @@ -164,7 +164,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.parquet" compare="sim_size" delta="200"/> + <output name="normalized_data" file="normalized_data.parquet" compare="sim_size" delta="200" ftype="parquet"/> </test> <test><!-- TEST 7 --> <param name="input_choice" value="2"/> @@ -178,7 +178,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.parquet" compare="sim_size" delta="200"/> + <output name="normalized_data" file="normalized_data.parquet" compare="sim_size" delta="200" ftype="parquet"/> </test> <test><!-- TEST 8 --> <param name="input_choice" value="2"/> @@ -192,7 +192,7 @@ <param name="t" value="0.05"/> <param name="t2" value="0.05"/> <param name="alpha" value="0"/> - <output name="normalized_data" file="normalized_data.csv"/> + <output name="normalized_data" file="normalized_data.tsv" ftype="tsv"/> </test> <!-- The following test has different results on three platform I've tried --> <!-- <test>