diff macros.xml @ 10:821062fc5782 draft default tip

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit 2b8b1dcb2947c6503fd4f82904df708e4f88ea1d
author recetox
date Fri, 04 Jul 2025 09:43:22 +0000
parents 6fc9f6dbcef5
children
line wrap: on
line diff
--- a/macros.xml	Fri May 16 10:14:27 2025 +0000
+++ b/macros.xml	Fri Jul 04 09:43:22 2025 +0000
@@ -26,10 +26,6 @@
         </xrefs>
      </xml>
 
-    <xml name="input_data">
-        <param type="data" name="data" label="Feature table" format="csv,tsv,tabular,parquet" help=""/>
-    </xml>
-
     <xml name="wf">
         <conditional name="wf">
             <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)">
@@ -81,22 +77,15 @@
             </when>
         </conditional>
     </xml>
-    <xml name="split_output">
-        <param name = "keep_two_output" label="Output metadata and data matrix as separate files" type="boolean" checked="false" 
-                truevalue="TRUE" falsevalue="FALSE" help="Keep two output files, one being the data matrix (feature table) and the second being the  metadata table." />
-    </xml>
 
     <xml name="outputs">
         <outputs>
             <data name="normalized_data" format="tabular" label="Normalized table of ${on_string}">
                 <change_format>
-                    <when input_dataset="data" attribute="ext" value="parquet" format="parquet" />
-                </change_format>
-            </data>
-            <data name="metadata" format="tabular" label="Metadata table of ${on_string}">
-                <filter>keep_two_output</filter>
-                <change_format>
-                    <when input_dataset="data" attribute="ext" value="parquet" format="parquet" />
+                    <when input_dataset="data_matrix" attribute="ext" value="parquet" format="parquet" />
+                    <when input_dataset="data_matrix" attribute="ext" value="csv" format="csv" />
+                    <when input_dataset="data_matrix" attribute="ext" value="tsv" format="tsv" />
+                    <when input_dataset="data_matrix" attribute="ext" value="tabular" format="tabular" />
                 </change_format>
             </data>
         </outputs>