# HG changeset patch
# User recetox
# Date 1664464864 0
# Node ID b77023c41c76feca3e82f345420025f3c56ec492
# Parent 3287108909633e793bb5595416f6d625eaa41b97
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit d82e7dad96bebe9424ac7bf490e2786d82c3681a
diff -r 328710890963 -r b77023c41c76 macros.xml
--- a/macros.xml Wed Mar 23 11:35:30 2022 +0000
+++ b/macros.xml Thu Sep 29 15:21:04 2022 +0000
@@ -8,6 +8,11 @@
familyName="Skoryk"
url="https://github.com/maximskorik"
identifier="0000-0003-2056-8018" />
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-
@@ -86,7 +93,7 @@
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diff -r 328710890963 -r b77023c41c76 test-data/feature_table.csv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/feature_table.csv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName,M85T34,M86T41,M86T518,M86T539
+VT_160120_002,228520.06430737,35646729.21543971,2386896.97966461,1026645.83653468
+VT_160120_004,90217.384387202,35735702.457215995,2456290.69621518,1089246.46040563
+VT_160120_006,235656.75288383896,37021134.452711605,8873450.40260241,837856.449608585
+VT_160120_008,16622.9351783435,44302499.262606,2466946.89667101,994979.069689685
+VT_160120_010,62385.0742465736,44639738.0735709,2389372.85729467,954938.131337246
diff -r 328710890963 -r b77023c41c76 test-data/feature_table.parquet
Binary file test-data/feature_table.parquet has changed
diff -r 328710890963 -r b77023c41c76 test-data/feature_table.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/feature_table.tsv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName M85T34 M86T41 M86T518 M86T539
+VT_160120_002 228520.06430737 35646729.21543971 2386896.97966461 1026645.83653468
+VT_160120_004 90217.384387202 35735702.457215995 2456290.69621518 1089246.46040563
+VT_160120_006 235656.75288383896 37021134.452711605 8873450.40260241 837856.449608585
+VT_160120_008 16622.9351783435 44302499.262606 2466946.89667101 994979.069689685
+VT_160120_010 62385.0742465736 44639738.0735709 2389372.85729467 954938.131337246
diff -r 328710890963 -r b77023c41c76 test-data/input_data.parquet
Binary file test-data/input_data.parquet has changed
diff -r 328710890963 -r b77023c41c76 test-data/input_data.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_data.tsv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName class sampleType injectionOrder batch M85T34 M86T41 M86T518 M86T539
+VT_160120_002 sample sample 1 1 228520.06430737 35646729.21543971 2386896.97966461 1026645.83653468
+VT_160120_004 sample sample 2 1 90217.384387202 35735702.457215995 2456290.69621518 1089246.46040563
+VT_160120_006 sample sample 3 1 235656.75288383896 37021134.452711605 8873450.40260241 837856.449608585
+VT_160120_008 sample sample 4 1 16622.9351783435 44302499.262606 2466946.89667101 994979.069689685
+VT_160120_010 sample sample 5 1 62385.0742465736 44639738.0735709 2389372.85729467 954938.131337246
diff -r 328710890963 -r b77023c41c76 test-data/metadata.csv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/metadata.csv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName,class,sampleType,injectionOrder,batch
+VT_160120_002,sample,sample,1,1
+VT_160120_004,sample,sample,2,1
+VT_160120_006,sample,sample,3,1
+VT_160120_008,sample,sample,4,1
+VT_160120_010,sample,sample,5,1
diff -r 328710890963 -r b77023c41c76 test-data/metadata.parquet
Binary file test-data/metadata.parquet has changed
diff -r 328710890963 -r b77023c41c76 test-data/metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/metadata.tsv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName class sampleType injectionOrder batch
+VT_160120_002 sample sample 1 1
+VT_160120_004 sample sample 2 1
+VT_160120_006 sample sample 3 1
+VT_160120_008 sample sample 4 1
+VT_160120_010 sample sample 5 1
diff -r 328710890963 -r b77023c41c76 test-data/normalized_data.csv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/normalized_data.csv Thu Sep 29 15:21:04 2022 +0000
@@ -0,0 +1,6 @@
+sampleName,class,sampleType,injectionOrder,batch,M85T34,M86T41,M86T518,M86T539
+VT_160120_002,sample,sample,1,1,355200.506508035,75115889.9077485,6101488.54615418,2007379.02604984
+VT_160120_004,sample,sample,2,1,216897.826587868,75204863.1495248,6170882.26270475,2069979.64992079
+VT_160120_006,sample,sample,3,1,362337.195084504,76490295.1450204,12588041.969092,1818589.63912375
+VT_160120_008,sample,sample,4,1,143303.377379009,83771659.9549148,6181538.46316058,1975712.25920485
+VT_160120_010,sample,sample,5,1,189065.516447239,84108898.7658797,6103964.42378424,1935671.32085241
diff -r 328710890963 -r b77023c41c76 test-data/normalized_data.parquet
Binary file test-data/normalized_data.parquet has changed
diff -r 328710890963 -r b77023c41c76 waveica.xml
--- a/waveica.xml Wed Mar 23 11:35:30 2022 +0000
+++ b/waveica.xml Thu Sep 29 15:21:04 2022 +0000
@@ -1,4 +1,4 @@
-
+
removal of batch effects for untargeted metabolomics data
macros.xml
@@ -7,6 +7,7 @@
r-recetox-waveica
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