Mercurial > repos > rhohensinner > galaxy_irods_interface
diff irods_upload.py @ 4:84f685c067ad draft default tip
"planemo upload commit b2a00d9c24285fef0fb131d1832ecf4c337e5038-dirty"
author | rhohensinner |
---|---|
date | Wed, 04 Aug 2021 12:01:55 +0000 |
parents | d2be2eb8350f |
children |
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--- a/irods_upload.py Mon Jul 19 13:11:45 2021 +0000 +++ b/irods_upload.py Wed Aug 04 12:01:55 2021 +0000 @@ -9,10 +9,13 @@ import os import shutil import sys -import main from json import dump, load, loads -global python_path -sys.path = python_path +with open("python__path.txt", "r") as pp: + ppstr = pp.read() + temp = ppstr.split(",")[:-1] + for it in temp: + sys.path.append(it) + from galaxy.datatypes import sniff from galaxy.datatypes.registry import Registry from galaxy.datatypes.upload_util import handle_upload, UploadProblemException @@ -308,7 +311,6 @@ print('usage: upload.py <root> <datatypes_conf> <json paramfile> <output spec> ...', file=sys.stderr) sys.exit(1) - sys.path.append(argv[5]) output_paths = parse_outputs(sys.argv[4:]) registry = Registry()