Mercurial > repos > rhohensinner > galaxy_irods_interface
diff irods_upload.py @ 3:d2be2eb8350f draft
"planemo upload commit b2a00d9c24285fef0fb131d1832ecf4c337e5038-dirty"
author | rhohensinner |
---|---|
date | Mon, 19 Jul 2021 13:11:45 +0000 |
parents | 0641ea2f75b1 |
children | 84f685c067ad |
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--- a/irods_upload.py Fri Jul 02 09:40:25 2021 +0000 +++ b/irods_upload.py Mon Jul 19 13:11:45 2021 +0000 @@ -9,9 +9,10 @@ import os import shutil import sys -sys.path.append("/home/richard/galaxy/lib") +import main from json import dump, load, loads - +global python_path +sys.path = python_path from galaxy.datatypes import sniff from galaxy.datatypes.registry import Registry from galaxy.datatypes.upload_util import handle_upload, UploadProblemException @@ -307,6 +308,7 @@ print('usage: upload.py <root> <datatypes_conf> <json paramfile> <output spec> ...', file=sys.stderr) sys.exit(1) + sys.path.append(argv[5]) output_paths = parse_outputs(sys.argv[4:]) registry = Registry()