--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_select_index_by_path.xml	Mon Sep 25 03:35:26 2017 -0400
@@ -0,0 +1,52 @@
+<tool id="data_manager_select_index_by_path" name="Select index by path manager" tool_type="manage_data" version="0.0.2">
+    <description>path inputer</description>
+    <command interpreter="python">
+        path_name_value_key_manager.py
+        --value "${value}"
+        --dbkey "${dbkey}"
+        --name "${name}"
+        --path "${path}"
+        --data_table_name "${data_table}"
+        --json_output_file "${json_output_file}"
+    </command>
+    <inputs>
+        <param name="value" type="text" value="" label="value field for the entry.  Defaults to name if left blank." />
+        <param name="dbkey" type="text" value="" label="dbkey field for the entry.  Defaults to value if left blank." />
+        <param name="name" type="text" value="" label="name field for the entry. Defaults to the file name from path if left blank." />
+        <param name="path" type="text" value="" label="path field for the entry" />
+        <param name="data_table" type="select" value="" label="data table for the index">
+          <option value='all_fasta'>all_fasta</option>
+          <option value='bowtie2_indexes'>bowtie2_indexes</option>
+          <option value='bowtie_indexes'>bowtie_indexes</option>
+          <option value='bowtie_indexes_color'>bowtie_indexes_color</option>
+          <option value='bwa_mem_indexes'>bwa_mem_indexes</option>
+          <option value='bwameth_indexes'>bwameth_indexes</option>
+          <option value='fasta_indexes'>fasta_indexes</option>
+          <option value='gatk_picard_indexes'>gatk_picard_indexes</option>
+          <option value='gene_transfer'>gene_transfer</option>
+          <option value='hisat2_indexes'>hisat2_indexes</option>
+          <option value='kallisto_indexes'>kallisto_indexes</option>
+          <option value='picard_indexes'>picard_indexes</option>
+          <option value='tophat2_indexes'>tophat2_indexes</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="json_output_file" format="data_manager_json"/>
+    </outputs>
+
+    <help>
+Adds a server path to the selected data table.
+
+The tool will check the path exists but NOT check that it holds the expected data type.
+
+If name is not provided the filename from path less the extension is used.
+
+If value is not provided, the name will be used (or its default)
+
+If dbkey is not provided, the value will be used (or its default)
+
+    </help>
+    <citations>
+    </citations>
+
+</tool>