# HG changeset patch
# User rmarenco
# Date 1468532734 14400
# Node ID d5c3e461f484337424e70c50f5f5039ed88cc4fe
planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
diff -r 000000000000 -r d5c3e461f484 README.md
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md Thu Jul 14 17:45:34 2016 -0400
@@ -0,0 +1,11 @@
+Galaxy wrapper for blastXmlToPsl
+--------------------------------
+
+Converts blast XML output to PSLs
+
+This tool is configured only to use this command, at the moment:
+- blastXmlToPsl -convertToNucCoords $input $output
+
+Please use another tool or contact me
+
+(Contains blastXmlToPsl binary for [linux.x86_64](http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/))
diff -r 000000000000 -r d5c3e461f484 blastXmlToPsl.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/blastXmlToPsl.xml Thu Jul 14 17:45:34 2016 -0400
@@ -0,0 +1,20 @@
+
+
+ blastXmlToPsl
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff -r 000000000000 -r d5c3e461f484 test-data/tblastn_Dbia3_ci.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tblastn_Dbia3_ci.xml Thu Jul 14 17:45:34 2016 -0400
@@ -0,0 +1,297 @@
+
+
+
+ tblastn
+ TBLASTN 2.2.30+
+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
+ Dbia3.fa
+ Query_1
+ ci-PA FBpp0088245
+ 1397
+
+
+ BLOSUM62
+ 0.01
+ 11
+ 1
+ L;
+
+
+
+
+ 1
+ Query_1
+ ci-PA FBpp0088245
+ 1397
+
+
+ 1
+ gnl|BL_ORD_ID|0
+ contig1
+ 0
+ 45179
+
+
+ 1
+ 852.818
+ 2202
+ 0
+ 576
+ 1396
+ 31367
+ 33826
+ 0
+ -2
+ 540
+ 627
+ 39
+ 840
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLQQNNS--RHNLQEHNIDSSPCSEDSHLGKMLGTXXXXXXXXXXXXXXNHHLVNGVRASDSLLTYSPDDLAEXXXXXXXXXXXXXXXXXXXXXXXRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQG--TVSGSIQGQFRRDSQNSTASTYYGXXXXXXXXXXXXXXXIPTMRPNPSCN-STASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLPVLNKE--SNKSLNACINKPNIGVQGVGIYNXXXXXXXXXHLIATNLKRLQRKDSE--YHNFTSGRFSVPSYMHSLHIKNNKPVGENEFDKAIASNA-RRQTDPVPNINLDPLTNISRFSTTPHSFDINVGKTN--NIASSINKDNLRKDLFTVSIKADMAMTSDQHPNERINLDEVEELILPDEMLQYLNLVKDDTNHLEKEHQAVPVGSNVSETIASNH--YREQSNIYYTNKQILTPPSNVDI----QPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMNTDIGSKQQSALPSAHQRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETENIFKVHGDHDNEIQCGIISQSQMSPSTNLNNDGQFSTVNMQPITTSKLF-PPEPQKIVCDTQASNTSVMHLDTYQRTLEYVQSCQNWMETNNTSTNQIQSLPGMPVNNTLFPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMM
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLHRDSGQGRHNLQEHNIDSSPCSEELQVGKLIGMSSPSIKSESDESSPHHQLLSGVRASDCFLTYSQDGAAEHITLDDGWDCDDDVDVADLPIVLRAMVNVGSGNSMAPTIGGGVVARQRFRSRLQTKGINSSMVMLGNIPESNRTIGISELNQRITELKMEPGTACDITVPL--NTGLERISEDLSQNQS---NITLNKQSFFTASGSLQGHFRRDSQNSTASTYYGSMQSRRSSQSSQVSSISTMRPGPSYNTTTASLYDPISPGCSRRSSQMSNVVNSYALTSTSGLTAINKDLNANSSPNASINKPGLGGQYFGFYNNSLPPPPSSHLIATNLKHLQDTDSRSCYHNTTGGRFSIPNCTPSLHLDYNGPAGEQEIDKEIPNNILRRQSEPMPNISLDTLTNVSPLSGPLQNLQFPIGKARNVNITSSSNENTLRKGPCHATMKTEMTMTSEQHPNERINLDEVEELILPDEMLQYLNLVKDDQNYMEKDD--VAIRSTVPKTIKSNENLLLSKSNLNPIKKQIILPTSNFDVSINLQPNTSNLQTQEEHTMTTIGGLPSQREQN--IVPHQHEKTKCRSFPQEIDKTINIDIGFKEQPYPSSAYQPQITKSNQNEIIDSSMTSLPELN--PIFTKINSENVSKLHRDQNSEIQCGIVSQSQMSPSININNDGETSTLKNLPLTYSKFSGQPNTQTTVG---GSNTSSMVSDTYQRTLEYVQSCQNWVDTNNSSGDQIQS------NNTLWSDVSSSTHPYAGTNLVINDMTTSLTSLLEENRYLHMM
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRL +++ RHNLQEHNIDSSPCSE+ +GK++G SSPSIKSESD SS +H L++GVRASD LTYS D AE++ LDDGW+CDDDVDVADLPIVLRAMVN+G+GN+ A TIGG V+ARQRFR RLQTKGINSS +ML NIPESNRT GISELNQRITELKMEPGT +I +P NT + +ED QNQ+ N NKQ T SGS+QG FRRDSQNSTASTYYGSMQSRRSSQSSQVSSI TMRP PS N +TAS YDPISPGCSRRSSQMSN N + TSTSGL +NK+ +N S NA INKP +G Q G YN+SLPPPPSSHLIATNLK LQ DS YHN T GRFS+P+ SLH+ N P GE E DK I +N RRQ++P+PNI+LD LTN+S S + +GK NI SS N++ LRK ++K +M MTS+QHPNERINLDEVEELILPDEMLQYLNLVKDD N++EK+ V + S V +TI SN +SN+ KQI+ P SN D+ QPNT+ Q++ MT +GG SQRE + VP++H KC SF + K +N DIG K+Q SA+Q Q KSN N+IIDSSMTSLPELN I+ + +EN+ K+H D ++EIQCGI+SQSQMSPS N+NNDG+ ST+ P+T SK P Q V SNTS M DTYQRTLEYVQSCQNW++TNN+S +QIQS NNTL+ DVSSSTHPY GTN+VINDMTTSLTSLLEENRYL MM
+
+
+ 2
+ 604.749
+ 1558
+ 0
+ 14
+ 520
+ 34107
+ 35765
+ 0
+ -1
+ 395
+ 432
+ 48
+ 554
+ YSELQFLXXXXXXXXXXXXTVLPGSPCINQHHXXXXXXXXXXXXXXXXGGTSDSIKTS--IQPQICNENTLLGNA-GXXXXXXXXXXXXXXVTGQPH--DFHPAYRIPGYMEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+ YSELQFLASRRAAAVAAAATVLPVSPCINHVHTTDVSSSVTVPSMIQTVEASDSIKTATTIQPPICNGNTLLANSTGHHQNHQGQHVHSLNVTGQPHAHEFHPAYRIPGYMEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+ YSELQFLASRRAAAVAAAATVLP SPCIN H TDVSSSVTVPS+I T SDSIKT+ IQP ICN NTLL N+ GH NHQ QHVH++NVTGQPH +FHPAYRIPGYMEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+
+
+ 3
+ 119.398
+ 298
+ 0
+ 521
+ 575
+ 33880
+ 34044
+ 0
+ -3
+ 54
+ 54
+ 0
+ 55
+ FEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNE
+ FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNE
+ FEGCFKAYSRLENLKTHLRSHTGEKPY CEYPGCSKAFSNASDRAKHQNRTHSNE
+
+
+ 4
+ 33.4982
+ 75
+ 0.0015721
+ 1
+ 13
+ 41471
+ 41509
+ 0
+ -2
+ 13
+ 13
+ 0
+ 13
+ MDAYALPTYFPLA
+ MDAYALPTYFPLA
+ MDAYALPTYFPLA
+
+
+
+
+
+
+ 1
+ 45179
+ 66
+ 19955683
+ 0.041
+ 0.267
+ 0.14
+
+
+
+
+ 2
+ Query_2
+ ci-PC FBpp0300417
+ 572
+
+
+ 1
+ gnl|BL_ORD_ID|0
+ contig1
+ 0
+ 45179
+
+
+ 1
+ 616.69
+ 1589
+ 0
+ 14
+ 553
+ 33879
+ 35765
+ 0
+ -1
+ 416
+ 454
+ 91
+ 630
+ YSELQFLXXXXXXXXXXXXTVLPGSPCINQHHXXXXXXXXXXXXXXXXGGTSDSIKT--SIQPQICNENTLLGNA-GXXXXXXXXXXXXXXVTGQPH--DFHPAYRIPGYMEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT-------------------------------------------EKNHTLASIRDVAKPLVMLVIAQSIKIEHTVMR
+ YSELQFLASRRAAAVAAAATVLPVSPCINHVHTTDVSSSVTVPSMIQTVEASDSIKTATTIQPPICNGNTLLANSTGHHQNHQGQHVHSLNVTGQPHAHEFHPAYRIPGYMEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTVRLLLFKIFDFQA*LIVIVFSLKAVLRHIHAWKT*KHIYGHTQVKNPICASIRDAARRLVMQAIVQSIKIVLTVMR
+ YSELQFLASRRAAAVAAAATVLP SPCIN H TDVSSSVTVPS+I T SDSIKT +IQP ICN NTLL N+ GH NHQ QHVH++NVTGQPH +FHPAYRIPGYMEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT KN ASIRD A+ LVM I QSIKI TVMR
+
+
+ 2
+ 42.3578
+ 98
+ 1.2328e-06
+ 490
+ 572
+ 33769
+ 34056
+ 0
+ -3
+ 37
+ 47
+ 13
+ 96
+ DCTRGEKPFKAQYML---VVHMRRHTGEKPHKCTEK--NHTLASIRDVAKPLVML----VIAQSIKIEHTV----MRNRTFVKHLDAQNVTPTRAL
+ DCF*FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNEVSAQPSSNKNNL*LKSFRNRTFVKLLVARNVTPTQVL
+ DC E FKA L H+R HTGEKP+ C + ++ D AK V AQ ++ + RNRTFVK L A+NVTPT+ L
+
+
+ 3
+ 30.8018
+ 68
+ 0.00386248
+ 1
+ 13
+ 41471
+ 41509
+ 0
+ -2
+ 13
+ 13
+ 0
+ 13
+ MDAYALPTYFPLA
+ MDAYALPTYFPLA
+ MDAYALPTYFPLA
+
+
+
+
+
+
+ 1
+ 45179
+ 60
+ 7679488
+ 0.041
+ 0.267
+ 0.14
+
+
+
+
+ 3
+ Query_3
+ ci-PB FBpp0297298
+ 1279
+
+
+ 1
+ gnl|BL_ORD_ID|0
+ contig1
+ 0
+ 45179
+
+
+ 1
+ 855.514
+ 2209
+ 0
+ 458
+ 1278
+ 31367
+ 33826
+ 0
+ -2
+ 540
+ 627
+ 39
+ 840
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLQQNNS--RHNLQEHNIDSSPCSEDSHLGKMLGTXXXXXXXXXXXXXXNHHLVNGVRASDSLLTYSPDDLAEXXXXXXXXXXXXXXXXXXXXXXXRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQG--TVSGSIQGQFRRDSQNSTASTYYGXXXXXXXXXXXXXXXIPTMRPNPSCN-STASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLPVLNKE--SNKSLNACINKPNIGVQGVGIYNXXXXXXXXXHLIATNLKRLQRKDSE--YHNFTSGRFSVPSYMHSLHIKNNKPVGENEFDKAIASNA-RRQTDPVPNINLDPLTNISRFSTTPHSFDINVGKTN--NIASSINKDNLRKDLFTVSIKADMAMTSDQHPNERINLDEVEELILPDEMLQYLNLVKDDTNHLEKEHQAVPVGSNVSETIASNH--YREQSNIYYTNKQILTPPSNVDI----QPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMNTDIGSKQQSALPSAHQRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETENIFKVHGDHDNEIQCGIISQSQMSPSTNLNNDGQFSTVNMQPITTSKLF-PPEPQKIVCDTQASNTSVMHLDTYQRTLEYVQSCQNWMETNNTSTNQIQSLPGMPVNNTLFPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMM
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLHRDSGQGRHNLQEHNIDSSPCSEELQVGKLIGMSSPSIKSESDESSPHHQLLSGVRASDCFLTYSQDGAAEHITLDDGWDCDDDVDVADLPIVLRAMVNVGSGNSMAPTIGGGVVARQRFRSRLQTKGINSSMVMLGNIPESNRTIGISELNQRITELKMEPGTACDITVPL--NTGLERISEDLSQNQS---NITLNKQSFFTASGSLQGHFRRDSQNSTASTYYGSMQSRRSSQSSQVSSISTMRPGPSYNTTTASLYDPISPGCSRRSSQMSNVVNSYALTSTSGLTAINKDLNANSSPNASINKPGLGGQYFGFYNNSLPPPPSSHLIATNLKHLQDTDSRSCYHNTTGGRFSIPNCTPSLHLDYNGPAGEQEIDKEIPNNILRRQSEPMPNISLDTLTNVSPLSGPLQNLQFPIGKARNVNITSSSNENTLRKGPCHATMKTEMTMTSEQHPNERINLDEVEELILPDEMLQYLNLVKDDQNYMEKDD--VAIRSTVPKTIKSNENLLLSKSNLNPIKKQIILPTSNFDVSINLQPNTSNLQTQEEHTMTTIGGLPSQREQN--IVPHQHEKTKCRSFPQEIDKTINIDIGFKEQPYPSSAYQPQITKSNQNEIIDSSMTSLPELN--PIFTKINSENVSKLHRDQNSEIQCGIVSQSQMSPSININNDGETSTLKNLPLTYSKFSGQPNTQTTVG---GSNTSSMVSDTYQRTLEYVQSCQNWVDTNNSSGDQIQS------NNTLWSDVSSSTHPYAGTNLVINDMTTSLTSLLEENRYLHMM
+ KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRL +++ RHNLQEHNIDSSPCSE+ +GK++G SSPSIKSESD SS +H L++GVRASD LTYS D AE++ LDDGW+CDDDVDVADLPIVLRAMVN+G+GN+ A TIGG V+ARQRFR RLQTKGINSS +ML NIPESNRT GISELNQRITELKMEPGT +I +P NT + +ED QNQ+ N NKQ T SGS+QG FRRDSQNSTASTYYGSMQSRRSSQSSQVSSI TMRP PS N +TAS YDPISPGCSRRSSQMSN N + TSTSGL +NK+ +N S NA INKP +G Q G YN+SLPPPPSSHLIATNLK LQ DS YHN T GRFS+P+ SLH+ N P GE E DK I +N RRQ++P+PNI+LD LTN+S S + +GK NI SS N++ LRK ++K +M MTS+QHPNERINLDEVEELILPDEMLQYLNLVKDD N++EK+ V + S V +TI SN +SN+ KQI+ P SN D+ QPNT+ Q++ MT +GG SQRE + VP++H KC SF + K +N DIG K+Q SA+Q Q KSN N+IIDSSMTSLPELN I+ + +EN+ K+H D ++EIQCGI+SQSQMSPS N+NNDG+ ST+ P+T SK P Q V SNTS M DTYQRTLEYVQSCQNW++TNN+S +QIQS NNTL+ DVSSSTHPY GTN+VINDMTTSLTSLLEENRYL MM
+
+
+ 2
+ 529.25
+ 1362
+ 0
+ 1
+ 402
+ 34107
+ 35435
+ 0
+ -1
+ 310
+ 341
+ 43
+ 444
+ MEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+ MEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+ MEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT
+
+
+ 3
+ 119.398
+ 298
+ 0
+ 403
+ 457
+ 33880
+ 34044
+ 0
+ -3
+ 54
+ 54
+ 0
+ 55
+ FEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNE
+ FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNE
+ FEGCFKAYSRLENLKTHLRSHTGEKPY CEYPGCSKAFSNASDRAKHQNRTHSNE
+
+
+
+
+
+
+ 1
+ 45179
+ 66
+ 18186509
+ 0.041
+ 0.267
+ 0.14
+
+
+
+
+
+
diff -r 000000000000 -r d5c3e461f484 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Thu Jul 14 17:45:34 2016 -0400
@@ -0,0 +1,23 @@
+
+
+
+
+
+
+
+ http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/blastXmlToPsl
+
+ http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/blastXmlToPsl
+
+
+
+ $INSTALL_DIR/bin/blastXmlToPsl
+
+
+ $INSTALL_DIR/bin
+
+
+
+ The tools downloaded by this dependency definition are free for academic use.
+
+
\ No newline at end of file