Mercurial > repos > rmarenco > hubarchivecreator
annotate macros.xml @ 29:7e8a8b732db3 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
| author | yating-l |
|---|---|
| date | Wed, 16 May 2018 18:04:20 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
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29
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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1 <macros> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
2 <xml name="verify_hub_structure" token_genome="Dbia3" token_test="common"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
3 <!--genomes.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
4 <extra_files type="file" name="myHub/genomes.txt" value="@TEST@/myHub/genomes.txt" /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
5 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
6 <extra_files type="file" name="myHub/@GENOME@.html" value="@TEST@/myHub/@GENOME@.html"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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7 <!-- hub.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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8 <extra_files type="file" name="myHub/hub.txt" value="@TEST@/myHub/hub.txt" lines_diff="2"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
9 <assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
10 <has_text text="email"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
11 </assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
12 </extra_files> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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13 <!-- 2bit file --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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14 <extra_files type="file" name="myHub/@GENOME@/@GENOME@.2bit" value="common/@GENOME@.2bit" /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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15 <!-- groups.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
16 <extra_files type="file" name="myHub/@GENOME@/groups.txt" value="@TEST@/myHub/@GENOME@/groups.txt" /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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17 <!-- description.html --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
18 <extra_files type="file" name="myHub/@GENOME@/description.html" value="@TEST@/myHub/@GENOME@/description.html"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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19 <!-- trackDb.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
20 <extra_files type="file" name="myHub/@GENOME@/trackDb.txt"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
21 <assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
22 <has_text text="track"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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23 <has_text text="longLabel"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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24 <has_text text="shortLabel"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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25 <has_text text="bigDataUrl"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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26 <has_text text="type"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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27 <has_text text="visibility"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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28 <has_text text="thickDrawItem"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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29 <has_text text="priority"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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30 <has_text text="color"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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31 <has_text text="group"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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32 <yield /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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33 </assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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34 </extra_files> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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35 </xml> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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36 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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37 <xml name="verify_hub_structure_no_track" token_genome="Dbia3" token_test="common"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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38 <!--genomes.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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39 <extra_files type="file" name="myHub/genomes.txt" value="@TEST@/myHub/genomes.txt" /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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40 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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41 <extra_files type="file" name="myHub/@GENOME@.html" value="@TEST@/myHub/@GENOME@.html"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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42 <!-- hub.txt --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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43 <extra_files type="file" name="myHub/hub.txt" value="@TEST@/myHub/hub.txt" lines_diff="2"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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44 <assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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45 <has_text text="email"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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46 </assert_contents> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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47 </extra_files> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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48 <!-- 2bit file --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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49 <extra_files type="file" name="myHub/@GENOME@/@GENOME@.2bit" value="common/@GENOME@.2bit" /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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50 <!-- description.html --> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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51 <extra_files type="file" name="myHub/@GENOME@/description.html" value="@TEST@/myHub/@GENOME@/description.html"/> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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52 </xml> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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53 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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54 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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55 <xml name="add_trix_file"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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56 <conditional name="add_trix_index"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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changeset
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57 <param name="add_trix_index_selector" type="select" label="Add Trix index that allow for fast look-up of free text associated with a list of identifiers." help="More about Trix index: https://genome.ucsc.edu/goldenpath/help/trix.html"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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58 <option value="no" selected="true">No</option> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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59 <option value="yes">Yes</option> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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60 </param> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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61 <when value="yes"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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62 <param name="trix_index" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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63 type="data" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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64 format="txt" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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65 multiple="true" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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66 min="2" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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changeset
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67 max="2" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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68 label="Specify Trix index" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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69 help="Dataset collection containing ix and ixx files generated by UCSC Trix Index Generator" |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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70 /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
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71 <yield /> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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72 </when> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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73 <when value="no"> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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74 </when> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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75 </conditional> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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76 </xml> |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
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77 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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78 |
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7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
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79 </macros> |