Mercurial > repos > rmarenco > hubarchivecreator

annotate bigGenePred.as @ 30:e7c4be523cb7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 2f1b3cc8c9cb463e460f7f79efe99ed472700ecf
author yating-l
date Tue, 19 Jun 2018 13:02:32 -0400
parents 25809f699cb3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
13
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
1 table bigGenePred
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
2 "bigGenePred gene models"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
3 (
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
4 string chrom; "Reference sequence chromosome or scaffold"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
5 uint chromStart; "Start position in chromosome"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
6 uint chromEnd; "End position in chromosome"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
7 string name; "Name or ID of item, ideally both human readable and unique"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
8 uint score; "Score (0-1000)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
9 char[1] strand; "+ or - for strand"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
10 uint thickStart; "Start of where display should be thick (start codon)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
11 uint thickEnd; "End of where display should be thick (stop codon)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
12 uint reserved; "RGB value (use R,G,B string in input file)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
13 int blockCount; "Number of blocks"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
14 int[blockCount] blockSizes; "Comma separated list of block sizes"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
15 int[blockCount] chromStarts; "Start positions relative to chromStart"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
16 string name2; "Alternative/human readable name"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
17 string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
18 string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
19 int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
20 string type; "Transcript type"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
21 string geneName; "Primary identifier for gene"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
22 string geneName2; "Alternative/human readable gene name"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
23 string geneType; "Gene type"
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
24 )
25809f699cb3 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
rmarenco
parents:
diff changeset
25