Mercurial > repos > rmarenco > hubarchivecreator

comparison BigWig.py @ 23:2677f1899aa8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 07210e24fe7d22f5dfc84061310280f67f781fb1-dirty
author yating-l
date Tue, 09 May 2017 15:42:43 -0400
parents c02720d1afee
children fcc1021bd496
comparison
equal deleted inserted replaced
22:7ddf651457df 23:2677f1899aa8
19 self.name_bigwig = data_bigwig["name"] 19 self.name_bigwig = data_bigwig["name"]
20 self.priority = data_bigwig["order_index"] 20 self.priority = data_bigwig["order_index"]
21 self.track_color = data_bigwig["track_color"] 21 self.track_color = data_bigwig["track_color"]
22 # TODO: Think about how to avoid repetition of the group_name everywhere 22 # TODO: Think about how to avoid repetition of the group_name everywhere
23 self.group_name = data_bigwig["group_name"] 23 self.group_name = data_bigwig["group_name"]
24 24 if data_bigwig["long_label"]:
25 self.long_label = data_bigwig["long_label"]
26 else:
27 self.long_label = self.name_bigwig
25 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig ) 28 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig )
26 29
27 trackName = "".join( ( self.name_bigwig, ".bigwig" ) ) 30 trackName = "".join( ( self.name_bigwig, ".bigwig" ) )
28 31
29 myBigWigFilePath = os.path.join(self.myTrackFolderPath, trackName) 32 myBigWigFilePath = os.path.join(self.myTrackFolderPath, trackName)
30 shutil.copy(self.input_bigwig_path, myBigWigFilePath) 33 shutil.copy(self.input_bigwig_path, myBigWigFilePath)
31 34
32 # Create the Track Object 35 # Create the Track Object
33 self.createTrack(file_path=trackName, 36 self.createTrack(file_path=trackName,
34 track_name=trackName, 37 track_name=trackName,
35 long_label=self.name_bigwig, 38 long_label=self.long_label,
36 track_type='bigWig', visibility='full', 39 track_type='bigWig', visibility='full',
37 priority=self.priority, 40 priority=self.priority,
38 track_file=myBigWigFilePath, 41 track_file=myBigWigFilePath,
39 track_color=self.track_color, 42 track_color=self.track_color,
40 group_name=self.group_name) 43 group_name=self.group_name)