Mercurial > repos > rmarenco > hubarchivecreator

comparison hubArchiveCreator.xml @ 15:2a45cd656e8e draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit f11032a9df62c79a46f6e4a055a3c7ae981ea721
author rmarenco
date Fri, 02 Sep 2016 15:41:51 -0400
parents cbd8982c9f51
children 3233451a3bd6
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14:cbd8982c9f51 15:2a45cd656e8e
3 This Galaxy tool permits to prepare your files to be ready for 3 This Galaxy tool permits to prepare your files to be ready for
4 Assembly Hub visualization. 4 Assembly Hub visualization.
5 </description> 5 </description>
6 6
7 <requirements> 7 <requirements>
8 <!-- Conda dependencies -->
9 <requirement type="package" version="332">ucsc-bedtobigbed</requirement>
10 <requirement type="package" version="332">ucsc-fatotwobit</requirement>
11 <requirement type="package" version="332">ucsc-genepredtobed</requirement>
12 <requirement type="package" version="332">ucsc-genepredtobiggenepred</requirement>
13 <requirement type="package" version="332">ucsc-gff3togenepred</requirement>
14 <requirement type="package" version="332">ucsc-gtftogenepred</requirement>
15 <requirement type="package" version="332">ucsc-twobitinfo</requirement>
16 <requirement type="package" version="1.3">samtools</requirement>
17 <!-- ToolShed dependencies -->
8 <requirement type="package" version="312">ucsc_tools</requirement> 18 <requirement type="package" version="312">ucsc_tools</requirement>
9 <requirement type="package" version="0.0.1">gff3ToGenePred</requirement> 19 <requirement type="package" version="0.0.1">gff3ToGenePred</requirement>
10 <requirement type="package" version="0.0.1">gtfToGenePred</requirement> 20 <requirement type="package" version="0.0.1">gtfToGenePred</requirement>
11 <requirement type="package" version="0.0.1">genePredToBed</requirement> 21 <requirement type="package" version="0.0.1">genePredToBed</requirement>
12 <requirement type="package" version="0.0.1">genePredToBigGenePred</requirement> 22 <requirement type="package" version="0.0.1">genePredToBigGenePred</requirement>
13 <requirement type="package" version="1.2">samtools</requirement> 23 <requirement type="package" version="1.2">samtools</requirement>
14 <!-- Conda dependencies -->
15 <requirement type="package" version="332">ucsc-bedtobigbed</requirement>
16 <requirement type="package" version="332">ucsc-fatotwobit</requirement>
17 <requirement type="package" version="324">ucsc-genepredtobed</requirement>
18 <requirement type="package" version="332">ucsc-genepredtobiggenepred</requirement>
19 <requirement type="package" version="324">ucsc-gff3togenepred</requirement>
20 <requirement type="package" version="324">ucsc-gtftogenepred</requirement>
21 <requirement type="package" version="324">ucsc-twobitinfo</requirement>
22 <requirement type="package" version="1.3.1">samtools</requirement>
23 </requirements> 24 </requirements>
24 25
25 <stdio> 26 <stdio>
26 <regex match="^pass1" 27 <regex match="^pass1"
27 source="stderr" 28 source="stderr"