Mercurial > repos > rmarenco > hubarchivecreator

comparison trackHub/tracks_partial.py @ 16:3233451a3bd6 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit fc73ec22a0db3ab09c4ac13dc58f0b54ae37845c
author rmarenco
date Sun, 25 Sep 2016 11:25:38 -0400
parents fb5e60d4d18a
children
comparison
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15:2a45cd656e8e 16:3233451a3bd6
29 """ 29 """
30 rval = [ 30 rval = [
31 '<html><head><title>Files for Composite Dataset (%s)</title></head><p/>\ 31 '<html><head><title>Files for Composite Dataset (%s)</title></head><p/>\
32 This composite dataset is composed of the following files:<p/><ul>' % ( 32 This composite dataset is composed of the following files:<p/><ul>' % (
33 self.file_ext)] 33 self.file_ext)]
34 for composite_name, composite_file in self.get_composite_files(dataset=dataset).iteritems(): 34
35 opt_text = '' 35 def create_tree(path, tree):
36 if composite_file.optional: 36 if path[0] in tree:
37 opt_text = ' (optional)' 37 create_tree(path[1:], tree[path[0]])
38 rval.append('<li><a href="%s">%s</a>%s' % (composite_name, composite_name, opt_text)) 38 else:
39 tree[path[0]] = {}
40 if len(path) == 1:
41 return
42 else:
43 create_tree(path[1:], tree[path[0]])
44
45 def print_tree(tree, level):
46 if len(tree) == 0:
47 return
48
49 for vertex in tree:
50 composite_name = vertex
51 bullet_point = '<li><a href="{0}>{0}</a></li>'.format(composite_name)
52 rval.append(bullet_point)
53 # Parent, so need to create a sub <ul>
54 if len(tree[vertex]) > 0:
55 rval.append('<ul>')
56 print_tree(tree[vertex], level+1)
57 rval.append('</ul>')
58
59 walkable_tree = {}
60
61 for composite_name_full_path, composite_file in self.get_composite_files(dataset=dataset).iteritems():
62 paths = composite_name_full_path.split('/')
63 # Prepare the tree from to perform a Depth First Search
64 create_tree(paths, walkable_tree)
65
66 # Perform a Depth First Search to print all the directory and files properly
67 print_tree(walkable_tree, 0)
68
69 # rval.append('<li><a href="%s">%s</a>%s' % (composite_name, composite_name, opt_text))
39 rval.append('</ul></html>') 70 rval.append('</ul></html>')
40 return "\n".join(rval) 71 return "\n".join(rval)
41 72
42 def set_peek( self, dataset, is_multi_byte=False ): 73 def set_peek( self, dataset, is_multi_byte=False ):
43 if not dataset.dataset.purged: 74 if not dataset.dataset.purged: