Mercurial > repos > rmarenco > hubarchivecreator

comparison spliceJunctions.as @ 20:40469b265ddb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 3af31e043f5b82636015c18e013d2f22ce6c9077-dirty
author yating-l
date Fri, 20 Jan 2017 17:12:03 -0500
parents
children
comparison
equal deleted inserted replaced
19:0152500d9acd 20:40469b265ddb
1 table spliceJunctions
2 "Predicted splice junctions"
3 (
4 string chrom; "Reference sequence chromosome or scaffold"
5 uint chromStart; "Start position in chromosome"
6 uint chromEnd; "End position in chromosome"
7 string name; "Name of item"
8 uint score; "Score from 0-1000"
9 char[1] strand; "+ or -"
10 uint thickStart; "Start of where display should be thick (start codon)"
11 uint thickEnd; "End of where display should be thick (stop codon)"
12 uint reserved; "Used as itemRgb as of 2004-11-22"
13 int blockCount; "Number of blocks"
14 int[blockCount] blockSizes; "Comma separated list of block sizes"
15 int[blockCount] chromStarts; "Start positions relative to chromStart"
16 uint junctionScore; "Number of reads supporting the splice junction"
17 )