Mercurial > repos > rmarenco > hubarchivecreator

comparison Bed.py @ 28:6aa28a85cc38 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060
author yating-l
date Mon, 10 Jul 2017 17:08:38 -0400
parents df42241d3731
children
comparison
equal deleted inserted replaced
27:cdd33c5c8ac1 28:6aa28a85cc38
42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName) 42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName)
43 with open(myBigBedFilePath, 'w') as self.bigBedFile: 43 with open(myBigBedFilePath, 'w') as self.bigBedFile:
44 subtools.bedToBigBed(self.sortedBedFile.name, 44 subtools.bedToBigBed(self.sortedBedFile.name,
45 self.chromSizesFile.name, 45 self.chromSizesFile.name,
46 self.bigBedFile.name, 46 self.bigBedFile.name,
47 typeOption='bed4',
48 tab='True',
47 extraIndex='name' 49 extraIndex='name'
48 ) 50 )
49 51
50 # Create the Track Object 52 # Create the Track Object
51 self.createTrack(file_path=trackName, 53 self.createTrack(file_path=trackName,