Mercurial > repos > rmarenco > hubarchivecreator

comparison TrackHub.py @ 7:a030b8023882 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 05d9161e2ac41a34a9ab5b1bb9fc012f6512e1ec
author rmarenco
date Tue, 19 Jul 2016 20:33:12 -0400
parents fb5e60d4d18a
children 680fae2362e2
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6:816956489fe9 7:a030b8023882
24 24
25 self.extra_files_path = extra_files_path 25 self.extra_files_path = extra_files_path
26 self.outputFile = outputFile 26 self.outputFile = outputFile
27 27
28 inputFastaFile = open(inputFastaFile, 'r') 28 inputFastaFile = open(inputFastaFile, 'r')
29 self.outputZip = zipfile.ZipFile(os.path.join(extra_files_path, 'myHub.zip'), 'w') 29 self.outputZip = zipfile.ZipFile(os.path.join(extra_files_path, 'myHub.zip'), 'w', allowZip64=True)
30 30
31 # Create the structure of the Assembly Hub 31 # Create the structure of the Assembly Hub
32 # TODO: Merge the following processing into a function as it is also used in twoBitCreator 32 # TODO: Merge the following processing into a function as it is also used in twoBitCreator
33 baseNameFasta = os.path.basename(inputFastaFile.name) 33 baseNameFasta = os.path.basename(inputFastaFile.name)
34 suffixTwoBit, extensionTwoBit = os.path.splitext(baseNameFasta) 34 suffixTwoBit, extensionTwoBit = os.path.splitext(baseNameFasta)