Mercurial > repos > rmarenco > hubarchivecreator

comparison util/Reader.py @ 30:e7c4be523cb7 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 2f1b3cc8c9cb463e460f7f79efe99ed472700ecf
author yating-l
date Tue, 19 Jun 2018 13:02:32 -0400
parents 7e8a8b732db3
children
comparison
equal deleted inserted replaced
29:7e8a8b732db3 30:e7c4be523cb7
1 import os
1 import json 2 import json
2 import logging 3 import logging
3 import codecs 4 import codecs
4 5
5 6
103 datatype_dictionary = {} 104 datatype_dictionary = {}
104 105
105 # TODO: Optimize this double loop 106 # TODO: Optimize this double loop
106 for input_data in array_inputs: 107 for input_data in array_inputs:
107 input_false_path = input_data["false_path"] 108 input_false_path = input_data["false_path"]
108 input_data["name"] = santitizer.sanitize_name_input(input_data["name"]) 109 # if the file is empty, skip the rest
109 extensionObject = ExtensionClass(input_false_path, input_data) 110 if os.path.isfile(input_false_path) and os.path.getsize(input_false_path) > 0:
110 extensionObject.generateCustomTrack() 111 input_data["name"] = santitizer.sanitize_name_input(input_data["name"])
111 datatype_dictionary.update({input_data["order_index"]: extensionObject}) 112 extensionObject = ExtensionClass(input_false_path, input_data)
113 extensionObject.generateCustomTrack()
114 datatype_dictionary.update({input_data["order_index"]: extensionObject})
115 else:
116 self.logger.info("The input file: %s is empty, skip creating the track for this data", input_data["name"])
112 return datatype_dictionary 117 return datatype_dictionary
113 118
114 119
115 120
116 121