Mercurial > repos > rmarenco > hubarchivecreator
diff bigGenePred.as @ 13:25809f699cb3 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
author | rmarenco |
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date | Thu, 11 Aug 2016 19:02:29 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bigGenePred.as Thu Aug 11 19:02:29 2016 -0400 @@ -0,0 +1,25 @@ +table bigGenePred +"bigGenePred gene models" + ( + string chrom; "Reference sequence chromosome or scaffold" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name or ID of item, ideally both human readable and unique" + uint score; "Score (0-1000)" + char[1] strand; "+ or - for strand" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "RGB value (use R,G,B string in input file)" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + string name2; "Alternative/human readable name" + string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" + string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" + int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" + string type; "Transcript type" + string geneName; "Primary identifier for gene" + string geneName2; "Alternative/human readable gene name" + string geneType; "Gene type" + ) +