Mercurial > repos > rmarenco > hubarchivecreator
diff Gff3.py @ 23:2677f1899aa8 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 07210e24fe7d22f5dfc84061310280f67f781fb1-dirty
| author | yating-l |
|---|---|
| date | Tue, 09 May 2017 15:42:43 -0400 |
| parents | c02720d1afee |
| children | df42241d3731 |
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--- a/Gff3.py Wed Apr 12 17:03:51 2017 -0400 +++ b/Gff3.py Tue May 09 15:42:43 2017 -0400 @@ -22,7 +22,10 @@ self.track_color = data_gff3["track_color"] # TODO: Think about how to avoid repetition of the group_name everywhere self.group_name = data_gff3["group_name"] - + if data_gff3["long_label"]: + self.long_label = data_gff3["long_label"] + else: + self.long_label = self.name_gff3 # TODO: See if we need these temporary files as part of the generated files unsorted_genePred_file = tempfile.NamedTemporaryFile(bufsize=0, suffix=".genePred") unsorted_bigGenePred_file = tempfile.NamedTemporaryFile(bufsize=0, suffix=".unsorted.bigGenePred") @@ -57,7 +60,7 @@ # Create the Track Object self.createTrack(file_path=trackName, track_name=trackName, - long_label=self.name_gff3, + long_label=self.long_label, track_type='bigGenePred', visibility='dense', priority=self.priority, track_file=myBigBedFilePath,