Mercurial > repos > rmarenco > hubarchivecreator

diff BedSimpleRepeats.py @ 16:3233451a3bd6 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit fc73ec22a0db3ab09c4ac13dc58f0b54ae37845c
author rmarenco
date Sun, 25 Sep 2016 11:25:38 -0400
parents 25809f699cb3
children c02720d1afee
line wrap: on
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--- a/BedSimpleRepeats.py	Fri Sep 02 15:41:51 2016 -0400
+++ b/BedSimpleRepeats.py	Sun Sep 25 11:25:38 2016 -0400
@@ -17,6 +17,7 @@
         self.input_bed_simple_repeats_false_path = input_bed_simple_repeats_false_path
         self.name_bed_simple_repeats = data_bed_simple_repeats["name"]
         self.priority = data_bed_simple_repeats["order_index"]
+        self.track_color = data_bed_simple_repeats["track_color"]
 
         sortedBedFile = tempfile.NamedTemporaryFile(suffix=".sortedBed")
 
@@ -42,7 +43,8 @@
                          track_name=trackName,
                          long_label=self.name_bed_simple_repeats, track_type='bigBed 4 +', visibility='dense',
                          priority=self.priority,
-                         track_file=myBigBedFilePath)
+                         track_file=myBigBedFilePath,
+                         track_color=self.track_color)
 
         # dataURL = "tracks/%s" % trackName
         #