Mercurial > repos > rmarenco > hubarchivecreator
diff TrackHub.py @ 11:d05236b15f81 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 3760d0c8353b924ecf994131a5c2eb381aa81fb2
author | rmarenco |
---|---|
date | Wed, 27 Jul 2016 10:10:49 -0400 |
parents | acc233161f50 |
children | 3233451a3bd6 |
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--- a/TrackHub.py Thu Jul 21 05:58:51 2016 -0400 +++ b/TrackHub.py Wed Jul 27 10:10:49 2016 -0400 @@ -28,6 +28,7 @@ self.reference_genome = inputFastaFile # TODO: Add the specie name self.genome_name = inputFastaFile.assembly_id + self.specie_html = self.genome_name + '.html' self.default_pos = None self.user_email = user_email @@ -148,8 +149,7 @@ self.__fillHubTxt__(hubTxtFilePath) # Add the hub.html file - # TODO: Change the name and get it depending on the specie - hubHtmlFilePath = os.path.join(myHubPath, 'dbia.html') + hubHtmlFilePath = os.path.join(myHubPath, self.specie_html) self.__fillHubHtmlFile__(hubHtmlFilePath) @@ -208,7 +208,7 @@ longLabel=self.genome_name, genomesFile='genomes.txt', email=self.user_email, - descriptionUrl='dbia.html' + descriptionUrl=self.specie_html ) genomesTxtFile.write(htmlMakoRendered)