Mercurial > repos > rmarenco > hubarchivecreator
diff Bed.py @ 26:df42241d3731 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
| author | yating-l |
|---|---|
| date | Mon, 03 Jul 2017 17:30:20 -0400 |
| parents | 2677f1899aa8 |
| children | 6aa28a85cc38 |
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--- a/Bed.py Fri Jun 02 17:36:24 2017 -0400 +++ b/Bed.py Mon Jul 03 17:30:20 2017 -0400 @@ -26,6 +26,7 @@ self.track_color = self.data_bed_generic["track_color"] # TODO: Think about how to avoid repetition of the group_name everywhere self.group_name = self.data_bed_generic["group_name"] + self.database = self.data_bed_generic["database"] if self.data_bed_generic["long_label"]: self.long_label = self.data_bed_generic["long_label"] else: @@ -42,7 +43,9 @@ with open(myBigBedFilePath, 'w') as self.bigBedFile: subtools.bedToBigBed(self.sortedBedFile.name, self.chromSizesFile.name, - self.bigBedFile.name) + self.bigBedFile.name, + extraIndex='name' + ) # Create the Track Object self.createTrack(file_path=trackName, @@ -51,7 +54,8 @@ priority=self.priority, track_file=myBigBedFilePath, track_color=self.track_color, - group_name=self.group_name) + group_name=self.group_name, + database=self.database) # dataURL = "tracks/%s" % trackName #