Mercurial > repos > rmarenco > hubarchivecreator

diff Gff3.py @ 26:df42241d3731 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
author: yating-l
date: Mon, 03 Jul 2017 17:30:20 -0400
parents: 2677f1899aa8
--- a/Gff3.py	Fri Jun 02 17:36:24 2017 -0400
+++ b/Gff3.py	Mon Jul 03 17:30:20 2017 -0400
@@ -22,6 +22,7 @@
         self.track_color = data_gff3["track_color"]
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = data_gff3["group_name"]
+        self.database = data_gff3["database"]
         if data_gff3["long_label"]:
             self.long_label = data_gff3["long_label"]
         else:
@@ -55,7 +56,8 @@
                                  bigBedFile.name,
                                  autoSql=auto_sql_option,
                                  typeOption='bed12+8',
-                                 tab=True)
+                                 tab=True,
+                                 extraIndex='name')
 
         # Create the Track Object
         self.createTrack(file_path=trackName,
@@ -65,6 +67,7 @@
                          priority=self.priority,
                          track_file=myBigBedFilePath,
                          track_color=self.track_color,
-                         group_name=self.group_name)
+                         group_name=self.group_name,
+                         database=self.database)
 
         print("- Gff3 %s created" % self.name_gff3)