Mercurial > repos > rmarenco > hubarchivecreator

diff Gtf.py @ 26:df42241d3731 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
author: yating-l
date: Mon, 03 Jul 2017 17:30:20 -0400
parents: 2677f1899aa8
--- a/Gtf.py	Fri Jun 02 17:36:24 2017 -0400
+++ b/Gtf.py	Mon Jul 03 17:30:20 2017 -0400
@@ -28,6 +28,7 @@
         self.track_color = data_gtf["track_color"]
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = data_gtf["group_name"]
+        self.database = data_gtf["database"]
         if data_gtf["long_label"]:
             self.long_label = data_gtf["long_label"]
         else:
@@ -66,7 +67,8 @@
                                  bigBedFile.name,
                                  autoSql=auto_sql_option,
                                  typeOption='bed12+8',
-                                 tab=True)
+                                 tab=True,
+                                 extraIndex='name')
 
 
         # Create the Track Object
@@ -76,7 +78,8 @@
                          visibility='dense', priority=self.priority,
                          track_file=myBigBedFilePath,
                          track_color=self.track_color,
-                         group_name=self.group_name)
+                         group_name=self.group_name,
+                         database=self.database)
 
         # TODO: Use Logging instead of print
         if modified_gtf.is_modified: