Mercurial > repos > rmarenco > hubarchivecreator

diff trackHub/README.md @ 1:fb5e60d4d18a draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 64cfc08088d11f6818c1b4e5514ef9e67969eaff-dirty
author rmarenco
date Wed, 13 Jul 2016 13:36:37 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trackHub/README.md	Wed Jul 13 13:36:37 2016 -0400
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+This folder exists to configure Galaxy to handle the files generated by HubArchiveCreator tool
+
+* The **content** of datatypes_conf.xml should go inside config/datatypes_conf.xml, under \<registration\> (Copy config/datatypes_conf.xml.sample to config/datatypes_conf.xml if it does not exist yet)
+* The content of tracks_partial.py should go inside `lib/galaxy/datatypes/tracks.py`
+* trackhub.xml should go inside display_application/ucsc/
+
+
+TODO:
+
+- [x] Create a script to copy all these files directly into galaxy => Done but not usable now I have changed the datatype to match Galaxy IUC
+- [ ] Need to modify the script `util/add_datatype.py` to match the changes introduced in https://github.com/galaxyproject/galaxy/pull/2348
+- [x] Create a package in ToolShed that install directly this when installing HubArchiveCreator => Not recommended by Galaxy IUC and team