Mercurial > repos > rmarenco > hubarchivecreator
diff trf_simpleRepeat.as @ 1:fb5e60d4d18a draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 64cfc08088d11f6818c1b4e5514ef9e67969eaff-dirty
author | rmarenco |
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date | Wed, 13 Jul 2016 13:36:37 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/trf_simpleRepeat.as Wed Jul 13 13:36:37 2016 -0400 @@ -0,0 +1,20 @@ +table simpleRepeat +"Describes the Simple Tandem Repeats" + ( + string chrom; "Reference sequence chromosome or scaffold" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Simple Repeats tag name" + uint period; "Length of repeat unit" + float copyNum; "Mean number of copies of repeat" + uint consensusSize; "Length of consensus sequence" + uint perMatch; "Percentage Match" + uint perIndel; "Percentage Indel" + uint score; "Alignment Score = 2*match-7*mismatch-7*indel; minscore=50" + uint A; "Percent of A's in repeat unit" + uint C; "Percent of C's in repeat unit" + uint G; "Percent of G's in repeat unit" + uint T; "Percent of T's in repeat unit" + float entropy; "Entropy" + lstring sequence; "Sequence of repeat unit element" + )