Mercurial > repos > rmarenco > hubarchivecreator

diff tool_dependencies.xml @ 24:fcc1021bd496 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 93e2e2fb59f99677425104a80c17f665fa7b2b4a-dirty
author yating-l
date Wed, 31 May 2017 11:35:16 -0400
parents 40469b265ddb
children 99dad5f9444c
line wrap: on
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--- a/tool_dependencies.xml	Tue May 09 15:42:43 2017 -0400
+++ b/tool_dependencies.xml	Wed May 31 11:35:16 2017 -0400
@@ -1,6 +1,5 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <!-- UCSC Tools in  -->
     <!-- Useful for HAC are:
         - twoBitInfo
         - sort
@@ -16,23 +15,15 @@
     <package name="samtools" version="1.2">
         <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    
-    <package name="ucsc_tools_340" version="1.0">
-        <install version="1.0">
-            <actions_group>
-                <actions architecture="x86_64" os="linux">
-                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>
-                    <action type="move_directory_files">
-                        <source_directory>.</source_directory>                       
-                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                    </action>    
-                </actions>
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions_group>
-         </install>
-         <readme>The well known UCSC tools from Jim Kent.</readme>
+    <package name="ucsc_hac" version="340">
+        <repository changeset_revision="a819439b6d76" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ucsc_bigbed" version="340">
+        <repository changeset_revision="b23d341df89d" name="package_ucsc_bigbed_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    
+
+    <package name="ucsc_bigwig" version="340">      
+        <repository changeset_revision="b1fb46f92da0" name="package_ucsc_bigwig_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+
 </tool_dependency>