Mercurial > repos > rmarenco > hubarchivecreator
view BigWig.py @ 9:4f9847539a28 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1b241bbccfc1b90ce2626dc4f49788bb9e693a80
author | rmarenco |
---|---|
date | Wed, 20 Jul 2016 12:29:08 -0400 |
parents | fb5e60d4d18a |
children | acc233161f50 |
line wrap: on
line source
#!/usr/bin/python import os import shutil # Internal dependencies from Datatype import Datatype from Track import Track from TrackDb import TrackDb class BigWig( Datatype ): def __init__(self, input_bigwig_path, data_bigwig, input_fasta_path, extra_files_path, tool_directory): super(BigWig, self).__init__( input_fasta_path, extra_files_path, tool_directory ) self.track = None self.input_bigwig_path = input_bigwig_path self.name_bigwig = data_bigwig["name"] self.priority = data_bigwig["order_index"] print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig ) trackName = "".join( ( self.name_bigwig, ".bigwig" ) ) myBigWigFilePath = os.path.join(self.myTrackFolderPath, trackName) shutil.copy(self.input_bigwig_path, myBigWigFilePath) # Create the Track Object dataURL = "tracks/%s" % trackName # Return the BigBed track trackDb = TrackDb( trackName=trackName, longLabel=self.name_bigwig, shortLabel=self.getShortName( self.name_bigwig ), trackDataURL=dataURL, trackType='bigWig', visibility='full', priority=self.priority, ) self.track = Track( trackFile=myBigWigFilePath, trackDb=trackDb, ) print("- %s created in %s" % (trackName, myBigWigFilePath))