Mercurial > repos > rmarenco > hubarchivecreator

view test-data/gtf/__main__.log @ 29:7e8a8b732db3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Wed, 16 May 2018 18:04:20 -0400
parents
children
line wrap: on
line source

DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####

DEBUG:root:Calling faToTwoBit:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling twoBitInfo:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_158.dat
DEBUG:root:data_value: {u'long_label': u'StringTie transcripts', u'name': u'StringTie_Assembled_Transcripts', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'}
DEBUG:root:Calling gtfToGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling genePredToBigGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:sorted_bed_file_name: /tmp/tmpO0sxeA.sortedBed.bigGenePred
DEBUG:root:chrom_sizes_file_name: /tmp/tmp9W1pAA.chrom.sizes
DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/169/dataset_195_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb
DEBUG:root:typeOption: bed12+8
DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as
DEBUG:root:tab option: True
DEBUG:root:Calling bedToBigBed:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:----- End of all_datatype_dictionary processing -----
DEBUG:root:all_datatype_ordered_dictionary keys are: [<Gtf.Gtf object at 0x7f8acc88c650>]
DEBUG:root:----- Beginning of Track adding processing -----
DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/169/dataset_195_files/myHub/Dbia3/groups.txt the group Default group
DEBUG:root:We just added track gonramp_StringTie_Assembled_Transcripts_bb (in group default_group)
DEBUG:root:----- End of Track adding processing -----
DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####