Mercurial > repos > rmarenco > hubarchivecreator

view test-data/one_group_two_tracks/__main__.log @ 31:9c5d82d3c87e draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit cd459f55fcb828e250986412fb779234ad89b3b2
author yating-l
date Tue, 19 Jun 2018 13:16:08 -0400
parents 7e8a8b732db3
children
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DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####

DEBUG:root:Calling faToTwoBit:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling twoBitInfo:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_154.dat
DEBUG:root:data_value: {u'index': u'/home/galaxy/galaxy/database/datasets/_metadata_files/000/metadata_5.dat', u'long_label': u'HISAT sequence alignment', u'name': u'HISAT2_on_data_1,_data_3,_and_data_2', u'database': u'', u'track_color': u'#c0504d', u'group_name': u'RNA-Seq', u'order_index': u'11'}
DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_158.dat
DEBUG:root:data_value: {u'long_label': u'StringTie transcripts ', u'name': u'StringTie_on_data_15:_Assembled_transcripts', u'database': u'', u'track_color': u'#c0504d', u'group_name': u'RNA-Seq', u'order_index': u'10'}
DEBUG:root:Calling gtfToGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling genePredToBigGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:sorted_bed_file_name: /tmp/tmpp_i4_J.sortedBed.bigGenePred
DEBUG:root:chrom_sizes_file_name: /tmp/tmpTsX28d.chrom.sizes
DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/tracks/StringTie_on_data_15:_Assembled_transcripts.bb
DEBUG:root:typeOption: bed12+8
DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as
DEBUG:root:tab option: True
DEBUG:root:Calling bedToBigBed:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:----- End of all_datatype_dictionary processing -----
DEBUG:root:all_datatype_ordered_dictionary keys are: [<Bam.Bam object at 0x7f11363da650>, <Gtf.Gtf object at 0x7f11363da6d0>]
DEBUG:root:----- Beginning of Track adding processing -----
DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/groups.txt the group RNA-Seq
DEBUG:root:We just added track gonramp_HISAT2_on_data_1__data_3__and_data_2_bam (in group rna-seq)
DEBUG:root:We DON'T add in /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/groups.txt the group RNA-Seq
DEBUG:root:We just added track gonramp_StringTie_on_data_15__Assembled_transcripts_bb (in group rna-seq)
DEBUG:root:----- End of Track adding processing -----
DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####