Mercurial > repos > rmarenco > hubarchivecreator

changeset 15:2a45cd656e8e draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit f11032a9df62c79a46f6e4a055a3c7ae981ea721
author rmarenco
date Fri, 02 Sep 2016 15:41:51 -0400
parents cbd8982c9f51
children 3233451a3bd6
files Bam.pyc Bed.pyc BedSimpleRepeats.pyc BigWig.pyc Datatype.pyc Gff3.pyc Gtf.pyc Track.pyc TrackDb.pyc TrackHub.pyc hubArchiveCreator.xml util/Fasta.pyc util/Filters.pyc util/__init__.pyc util/subtools.pyc
diffstat 15 files changed, 10 insertions(+), 9 deletions(-) [+]
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Binary file Bam.pyc has changed
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Binary file BigWig.pyc has changed
Binary file Datatype.pyc has changed
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Binary file Gtf.pyc has changed
Binary file Track.pyc has changed
Binary file TrackDb.pyc has changed
Binary file TrackHub.pyc has changed
--- a/hubArchiveCreator.xml	Mon Aug 15 19:19:32 2016 -0400
+++ b/hubArchiveCreator.xml	Fri Sep 02 15:41:51 2016 -0400
@@ -5,21 +5,22 @@
     </description>
 
     <requirements>
+        <!-- Conda dependencies -->
+        <requirement type="package" version="332">ucsc-bedtobigbed</requirement>
+        <requirement type="package" version="332">ucsc-fatotwobit</requirement>
+        <requirement type="package" version="332">ucsc-genepredtobed</requirement>
+        <requirement type="package" version="332">ucsc-genepredtobiggenepred</requirement>
+        <requirement type="package" version="332">ucsc-gff3togenepred</requirement>
+        <requirement type="package" version="332">ucsc-gtftogenepred</requirement>
+        <requirement type="package" version="332">ucsc-twobitinfo</requirement>
+        <requirement type="package" version="1.3">samtools</requirement>
+        <!-- ToolShed dependencies -->
         <requirement type="package" version="312">ucsc_tools</requirement>
         <requirement type="package" version="0.0.1">gff3ToGenePred</requirement>
         <requirement type="package" version="0.0.1">gtfToGenePred</requirement>
         <requirement type="package" version="0.0.1">genePredToBed</requirement>
         <requirement type="package" version="0.0.1">genePredToBigGenePred</requirement>
         <requirement type="package" version="1.2">samtools</requirement>
-        <!-- Conda dependencies -->
-        <requirement type="package" version="332">ucsc-bedtobigbed</requirement>
-        <requirement type="package" version="332">ucsc-fatotwobit</requirement>
-        <requirement type="package" version="324">ucsc-genepredtobed</requirement>
-        <requirement type="package" version="332">ucsc-genepredtobiggenepred</requirement>
-        <requirement type="package" version="324">ucsc-gff3togenepred</requirement>
-        <requirement type="package" version="324">ucsc-gtftogenepred</requirement>
-        <requirement type="package" version="324">ucsc-twobitinfo</requirement>
-        <requirement type="package" version="1.3.1">samtools</requirement>
     </requirements>
 
     <stdio>
Binary file util/Fasta.pyc has changed
Binary file util/Filters.pyc has changed
Binary file util/__init__.pyc has changed
Binary file util/subtools.pyc has changed