Mercurial > repos > rmarenco > hubarchivecreator
changeset 6:816956489fe9 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 20817d2bd61639d88226c9cd0392cea420ded222
| author | rmarenco |
|---|---|
| date | Tue, 19 Jul 2016 01:19:57 -0400 |
| parents | fcff8e9146e7 |
| children | a030b8023882 |
| files | Datatype.py Datatype.pyc TrackHub.pyc |
| diffstat | 3 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- a/Datatype.py Mon Jul 18 12:40:30 2016 -0400 +++ b/Datatype.py Tue Jul 19 01:19:57 2016 -0400 @@ -11,12 +11,16 @@ class Datatype(object): + + twoBitFile = None + def __init__( self, input_fasta_file, extra_files_path, tool_directory ): self.input_fasta_file = input_fasta_file self.extra_files_path = extra_files_path self.tool_directory = tool_directory + self.twoBitFile = None # Construction of the arborescence # TODO: Change the hard-coded path with a input based one @@ -27,7 +31,12 @@ # TODO: Redundant, should be refactored because they are all doing it...into hubArchiveCreator? # 2bit file creation from input fasta - self.twoBitFile = subtools.faToTwoBit(self.input_fasta_file, self.mySpecieFolderPath) + if not Datatype.twoBitFile: + print "We create the self.twoBit in " + self.__class__.__name__ + Datatype.twoBitFile = subtools.faToTwoBit(self.input_fasta_file, self.mySpecieFolderPath) + + # TODO: Remove this by saying to all children classes to use "Datatype.twoBitFile" instead + self.twoBitFile = Datatype.twoBitFile def getShortName( self, name_to_shortify ): # Slice to get from Long label the short label