Mercurial > repos > rnateam > aresite2
changeset 1:138ff4068d27 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/aresite2 commit 4897e30d01fe0ef4742bd58636269fdba5c09603
| author | rnateam |
|---|---|
| date | Sat, 04 Mar 2017 14:42:04 -0500 |
| parents | 6d3269dc319e |
| children | a3ce813ed604 |
| files | aresite2.py test-data/AREsite2_Rest_ATTTA_cxcl2_Homo_sapiens.bed |
| diffstat | 2 files changed, 14 insertions(+), 12 deletions(-) [+] |
line wrap: on
line diff
--- a/aresite2.py Thu Feb 02 19:33:27 2017 -0500 +++ b/aresite2.py Sat Mar 04 14:42:04 2017 -0500 @@ -97,8 +97,10 @@ evt = aresite["ttp_evidence"] eva = aresite["auf_evidence"] anno = aresite["annotation"] + meanaccs = ['{:.4e}'.format(x) for x in aresite["meanacshort"]] + meanaccl = ['{:.4e}'.format(x) for x in aresite["meanaclong"]] - aresite = zip(chrs,starts,ends,mots,anno,strands,genes,transcripts,evh,evt,eva) + aresite = zip(chrs,starts,ends,mots,anno,strands,genes,transcripts,meanaccs,meanaccl,evh,evt,eva) def getKey(item): return item[1]
--- a/test-data/AREsite2_Rest_ATTTA_cxcl2_Homo_sapiens.bed Thu Feb 02 19:33:27 2017 -0500 +++ b/test-data/AREsite2_Rest_ATTTA_cxcl2_Homo_sapiens.bed Sat Mar 04 14:42:04 2017 -0500 @@ -1,11 +1,11 @@ -chr4 74097045 74097050 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097083 74097088 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097257 74097262 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097449 74097454 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097499 74097504 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA <a href="http://www.genomebiology.com/content/supplementary/gb-2014-15-1-r12-s2.csv">http://www.genomebiology.com/content/supplementary/gb-2014-15-1-r12-s2.csv</a> NA -chr4 74097589 74097594 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097593 74097598 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097597 74097602 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097601 74097606 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74097605 74097610 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 NA NA NA -chr4 74098127 74098132 ATTTA Intron^CDS - ENSG00000081041 ENST00000508487 NA NA NA +chr4 74097045 74097050 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 6.7480e-01 6.4610e-01 NA NA NA +chr4 74097083 74097088 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 4.9620e-01 4.3020e-01 NA NA NA +chr4 74097257 74097262 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 5.4190e-01 4.5140e-01 NA NA NA +chr4 74097449 74097454 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 5.6410e-01 3.9620e-01 NA NA NA +chr4 74097499 74097504 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 7.1100e-01 6.3860e-01 NA <a href="http://www.genomebiology.com/content/supplementary/gb-2014-15-1-r12-s2.csv">http://www.genomebiology.com/content/supplementary/gb-2014-15-1-r12-s2.csv</a> NA +chr4 74097589 74097594 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 7.2750e-01 5.6500e-01 NA NA NA +chr4 74097593 74097598 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 7.4200e-01 5.8540e-01 NA NA NA +chr4 74097597 74097602 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 7.1180e-01 5.9670e-01 NA NA NA +chr4 74097601 74097606 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 6.9410e-01 5.8030e-01 NA NA NA +chr4 74097605 74097610 ATTTA Exon^3UTR - ENSG00000081041 ENST00000508487 6.8750e-01 5.6520e-01 NA NA NA +chr4 74098127 74098132 ATTTA Intron^CDS - ENSG00000081041 ENST00000508487 5.7420e-01 3.9430e-01 NA NA NA