Mercurial > repos > rnateam > blockclust

comparison tool_dependencies.xml @ 10:24d09ba85e45 draft

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author rnateam
date Tue, 03 Feb 2015 05:49:47 -0500
parents 57f66041cc0f
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9:57f66041cc0f 10:24d09ba85e45
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="0.1.19"> 3 <package name="samtools" version="0.1.19">
4 <repository changeset_revision="923adc89c666" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="923adc89c666" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="R_3_0_1" version="3.0.1"> 6 <package name="R" version="3.0.3">
7 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="eden" version="1.1"> 9 <package name="eden" version="1.1">
10 <repository changeset_revision="8087eef83c35" name="package_eden_1_1" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="8087eef83c35" name="package_eden_1_1" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="mcl" version="12.135"> 12 <package name="mcl" version="12.135">
14 </package> 14 </package>
15 <package name="blockclust_rlibs" version="1.0"> 15 <package name="blockclust_rlibs" version="1.0">
16 <install version="1.0"> 16 <install version="1.0">
17 <actions> 17 <actions>
18 <action type="setup_r_environment"> 18 <action type="setup_r_environment">
19 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 19 <repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
20 <package name="R_3_0_1" version="3.0.1" /> 20 <package name="R" version="3.0.3" />
21 </repository> 21 </repository>
22 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/ape_3.0-11.tar.gz</package> 22 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/ape_3.0-11.tar.gz</package>
23 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/plyr_1.8.tar.gz</package> 23 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/plyr_1.8.tar.gz</package>
24 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/digest_0.6.4.tar.gz</package> 24 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/digest_0.6.4.tar.gz</package>
25 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/gtable_0.1.2.tar.gz</package> 25 <package>https://github.com/bgruening/download_store/raw/master/blockclust/r-packages/gtable_0.1.2.tar.gz</package>
55 <destination>$INSTALL_DIR/bin</destination> 55 <destination>$INSTALL_DIR/bin</destination>
56 </action> 56 </action>
57 <action type="move_file"> 57 <action type="move_file">
58 <source>filterKnownBlockGroups.pl</source> 58 <source>filterKnownBlockGroups.pl</source>
59 <destination>$INSTALL_DIR/bin</destination> 59 <destination>$INSTALL_DIR/bin</destination>
60 </action> 60 </action>
61 <action type="move_file"> 61 <action type="move_file">
62 <source>perf</source> 62 <source>perf</source>
63 <destination>$INSTALL_DIR/bin</destination> 63 <destination>$INSTALL_DIR/bin</destination>
64 </action> 64 </action>
65 <action type="move_file"> 65 <action type="move_file">
96 <environment_variable action="set_to" name="BLOCKCLUST_DATA_PATH">$INSTALL_DIR/data</environment_variable> 96 <environment_variable action="set_to" name="BLOCKCLUST_DATA_PATH">$INSTALL_DIR/data</environment_variable>
97 </action> 97 </action>
98 </actions> 98 </actions>
99 </install> 99 </install>
100 <readme> 100 <readme>
101 101
102 </readme> 102 </readme>
103 </package> 103 </package>
104 </tool_dependency> 104 </tool_dependency>