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comparison blockclust.xml @ 13:dbb6ee3179bc draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/blockclust commit 6957c96f98dea265503f4e126d4aaa6f8c2e1d2e
author bgruening
date Sat, 04 Nov 2023 10:07:58 +0000
parents aab6cf87b40a
children
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12:aab6cf87b40a 13:dbb6ee3179bc
1 <tool id="blockclust" name="BlockClust" version="1.1.0"> 1 <tool id="blockclust" name="BlockClust" version="1.1.1">
2 <description>efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles</description> 2 <description>efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.0">blockclust</requirement> 4 <requirement type="package" version="1.1.1">blockclust</requirement>
5 </requirements> 5 </requirements>
6 <version_command>blockclust.py -v</version_command> 6 <version_command>blockclust.py -v</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 export BLOCKCLUST_DATA_PATH=\$(dirname \$(which blockclust.py))/../share/blockclust_data && 8 export BLOCKCLUST_DATA_PATH=\$(dirname \$(which blockclust.py))/../share/blockclust_data &&
9 9
129 <test expect_num_outputs="1"> 129 <test expect_num_outputs="1">
130 <param name="operation" value="pre"/> 130 <param name="operation" value="pre"/>
131 <param name="reads_bam" value="test.bam"/> 131 <param name="reads_bam" value="test.bam"/>
132 <output name="tags_bed"> 132 <output name="tags_bed">
133 <assert_contents> 133 <assert_contents>
134 <has_text_matching expression="chr6\t26555497\t26555527\ttag_10|1|19\t0.052632\t+" /> 134 <has_text_matching expression="chr6\t26555497\t26555527\ttag_10\|1\|19\t0.052632\t\+" />
135 <has_text_matching expression="chr11\t122017275\t122017297\ttag_30|1|3\t0.333333\t-" /> 135 <has_text_matching expression="chr11\t122017275\t122017297\ttag_30\|1\|3\t0.333333\t-" />
136 </assert_contents> 136 </assert_contents>
137 </output> 137 </output>
138 </test> 138 </test>
139 139
140 <!-- Test: Clustering only --> 140 <!-- Test: Clustering only -->