annotate blockclust_workflow.ga @ 12:62212df99efd draft

blockclust workflows 1.1.0
author rnateam
date Mon, 10 Dec 2018 10:46:54 -0500
parents 1e6d0af8c450
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
1 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
2 "a_galaxy_workflow": "true",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
3 "annotation": "",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
4 "format-version": "0.1",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
5 "name": "blockclust 1.1.0 complete",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
6 "steps": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
7 "0": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
8 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
9 "content_id": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
10 "errors": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
11 "id": 0,
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
12 "input_connections": {},
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
13 "inputs": [],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
14 "label": "blockclust_input",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
15 "name": "Input dataset",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
16 "outputs": [],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
17 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
18 "left": 200,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
19 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
20 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
21 "tool_id": null,
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
22 "tool_state": "{}",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
23 "tool_version": null,
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
24 "type": "data_input",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
25 "uuid": "b6e23dd8-46ca-4bd6-87f3-2f6b741b459b",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
26 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
27 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
28 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
29 "output_name": "output",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
30 "uuid": "d8c12432-a0db-4cba-a815-aba6a2de9626"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
31 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
32 ]
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
33 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
34 "1": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
35 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
36 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
37 "errors": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
38 "id": 1,
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
39 "input_connections": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
40 "input1": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
41 "id": 0,
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
42 "output_name": "output"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
43 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
44 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
45 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
46 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
47 "description": "runtime parameter for tool Samtools sort",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
48 "name": "input1"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
49 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
50 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
51 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
52 "name": "Samtools sort",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
53 "outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
54 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
55 "name": "output1",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
56 "type": "bam"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
57 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
58 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
59 "position": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
60 "left": 460,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
61 "top": 338
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
62 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
63 "post_job_actions": {},
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
64 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
65 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
66 "changeset_revision": "f56bdb93ae58",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
67 "name": "samtools_sort",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
68 "owner": "devteam",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
69 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
70 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
71 "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"prim_key_cond\": \"{\\\"prim_key_select\\\": \\\"\\\", \\\"__current_case__\\\": 0}\"}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
72 "tool_version": "2.0.2",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
73 "type": "tool",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
74 "uuid": "327e9b59-6d4e-482e-bcdf-c7cc5d8505c9",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
75 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
76 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
77 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
78 "output_name": "output1",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
79 "uuid": "22295821-a765-4e6c-804f-6c710e26923f"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
80 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
81 ]
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
82 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
83 "2": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
84 "annotation": "",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
85 "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
86 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
87 "id": 2,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
88 "input_connections": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
89 "tool_mode|reads_bam": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
90 "id": 1,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
91 "output_name": "output1"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
92 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
93 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
94 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
95 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
96 "description": "runtime parameter for tool BlockClust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
97 "name": "tool_mode"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
98 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
99 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
100 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
101 "name": "BlockClust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
102 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
103 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
104 "name": "tags_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
105 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
106 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
107 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
108 "name": "hclust_plot",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
109 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
110 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
111 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
112 "name": "clusters",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
113 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
114 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
115 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
116 "name": "model_based_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
117 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
118 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
119 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
120 "name": "nearest_neighbour_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
121 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
122 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
123 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
124 "name": "sim_tab_out",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
125 "type": "tabular"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
126 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
127 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
128 "name": "cluster_dist",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
129 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
130 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
131 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
132 "name": "cluster_hclust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
133 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
134 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
135 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
136 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
137 "left": 788,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
138 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
139 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
140 "post_job_actions": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
141 "HideDatasetActioncluster_dist": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
142 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
143 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
144 "output_name": "cluster_dist"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
145 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
146 "HideDatasetActioncluster_hclust": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
147 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
148 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
149 "output_name": "cluster_hclust"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
150 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
151 "HideDatasetActionclusters": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
152 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
153 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
154 "output_name": "clusters"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
155 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
156 "HideDatasetActionhclust_plot": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
157 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
158 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
159 "output_name": "hclust_plot"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
160 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
161 "HideDatasetActionmodel_based_pred_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
162 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
163 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
164 "output_name": "model_based_pred_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
165 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
166 "HideDatasetActionnearest_neighbour_pred_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
167 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
168 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
169 "output_name": "nearest_neighbour_pred_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
170 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
171 "HideDatasetActionsim_tab_out": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
172 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
173 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
174 "output_name": "sim_tab_out"
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
175 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
176 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
177 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
178 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
179 "changeset_revision": "aab6cf87b40a",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
180 "name": "blockclust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
181 "owner": "rnateam",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
182 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
183 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
184 "tool_state": "{\"tool_mode\": \"{\\\"operation\\\": \\\"pre\\\", \\\"reads_bam\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
185 "tool_version": "1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
186 "type": "tool",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
187 "uuid": "fd3043d3-609e-4303-bcb5-448cb749a319",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
188 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
189 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
190 "label": "tags_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
191 "output_name": "tags_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
192 "uuid": "39f8722a-8444-42f8-8104-f81201804c9c"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
193 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
194 ]
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
195 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
196 "3": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
197 "annotation": "",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
198 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
199 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
200 "id": 3,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
201 "input_connections": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
202 "infile": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
203 "id": 2,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
204 "output_name": "tags_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
205 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
206 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
207 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
208 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
209 "description": "runtime parameter for tool Sort",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
210 "name": "infile"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
211 }
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
212 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
213 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
214 "name": "Sort",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
215 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
216 {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
217 "name": "outfile",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
218 "type": "input"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
219 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
220 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
221 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
222 "left": 1116,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
223 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
224 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
225 "post_job_actions": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
226 "HideDatasetActionoutfile": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
227 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
228 "action_type": "HideDatasetAction",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
229 "output_name": "outfile"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
230 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
231 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
232 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
233 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
234 "changeset_revision": "74a8bef53a00",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
235 "name": "text_processing",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
236 "owner": "bgruening",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
237 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
238 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
239 "tool_state": "{\"sortkeys\": \"[{\\\"column\\\": \\\"1\\\", \\\"__index__\\\": 0, \\\"style\\\": \\\"\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"6\\\", \\\"__index__\\\": 1, \\\"style\\\": \\\"\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"2\\\", \\\"__index__\\\": 2, \\\"style\\\": \\\"n\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"3\\\", \\\"__index__\\\": 3, \\\"style\\\": \\\"n\\\", \\\"order\\\": \\\"\\\"}]\", \"__page__\": null, \"ignore_case\": \"\\\"true\\\"\", \"__rerun_remap_job_id__\": null, \"header\": \"\\\"0\\\"\", \"unique\": \"\\\"false\\\"\", \"infile\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
240 "tool_version": "1.1.1",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
241 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
242 "uuid": "ecaa7fb8-a10a-457c-9ce0-3b7f0647d1b4",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
243 "workflow_outputs": []
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
244 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
245 "4": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
246 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
247 "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1.2",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
248 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
249 "id": 4,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
250 "input_connections": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
251 "input": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
252 "id": 3,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
253 "output_name": "outfile"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
254 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
255 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
256 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
257 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
258 "description": "runtime parameter for tool blockbuster",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
259 "name": "input"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
260 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
261 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
262 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
263 "name": "blockbuster",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
264 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
265 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
266 "name": "output",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
267 "type": "bed"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
268 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
269 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
270 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
271 "left": 1376,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
272 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
273 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
274 "post_job_actions": {},
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1.2",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
276 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
277 "changeset_revision": "7c7ff7a3503f",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
278 "name": "blockbuster",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
279 "owner": "rnateam",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
280 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
281 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
282 "tool_state": "{\"distance\": \"\\\"40\\\"\", \"scale\": \"\\\"0.5\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"print\": \"\\\"bbf_reads\\\"\", \"tagFilter\": \"\\\"0\\\"\", \"merge\": \"\\\"0\\\"\", \"minBlockHeight\": \"\\\"1.0\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"minClusterHeight\": \"\\\"50.0\\\"\"}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
283 "tool_version": "0.1.2",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
284 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
285 "uuid": "8a3db40c-ae03-49ca-b47c-559ac455d712",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
286 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
287 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
288 "label": "blockbuster_out",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
289 "output_name": "output",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
290 "uuid": "95c21ce9-e988-44b9-978e-10a27b74d18e"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
291 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
292 ]
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
293 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
294 "5": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
295 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
296 "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
297 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
298 "id": 5,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
299 "input_connections": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
300 "tool_mode|input_bbo": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
301 "id": 4,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
302 "output_name": "output"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
303 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
304 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
305 "inputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
306 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
307 "description": "runtime parameter for tool BlockClust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
308 "name": "tool_mode"
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
309 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
310 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
311 "description": "runtime parameter for tool BlockClust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
312 "name": "tool_mode"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
313 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
314 ],
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
315 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
316 "name": "BlockClust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
317 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
318 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
319 "name": "tags_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
320 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
321 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
322 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
323 "name": "hclust_plot",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
324 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
325 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
326 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
327 "name": "clusters",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
328 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
329 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
330 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
331 "name": "model_based_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
332 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
333 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
334 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
335 "name": "nearest_neighbour_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
336 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
337 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
338 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
339 "name": "sim_tab_out",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
340 "type": "tabular"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
341 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
342 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
343 "name": "cluster_dist",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
344 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
345 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
346 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
347 "name": "cluster_hclust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
348 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
349 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
350 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
351 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
352 "left": 1694,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
353 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
354 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
355 "post_job_actions": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
356 "HideDatasetActioncluster_dist": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
357 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
358 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
359 "output_name": "cluster_dist"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
360 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
361 "HideDatasetActioncluster_hclust": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
362 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
363 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
364 "output_name": "cluster_hclust"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
365 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
366 "HideDatasetActionsim_tab_out": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
367 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
368 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
369 "output_name": "sim_tab_out"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
370 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
371 "HideDatasetActiontags_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
372 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
373 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
374 "output_name": "tags_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
375 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
376 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
377 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
378 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
379 "changeset_revision": "aab6cf87b40a",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
380 "name": "blockclust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
381 "owner": "rnateam",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
382 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
383 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
384 "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"enable_pred\\\": \\\"yes\\\"}, \\\"nochr\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"analysis\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
385 "tool_version": "1.1.0",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
386 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
387 "uuid": "e41a16eb-4edd-4f9e-b615-44d0c2988b63",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
388 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
389 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
390 "label": "clusters_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
391 "output_name": "clusters",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
392 "uuid": "287b4bae-55a1-4f38-b1c3-62ae60b4d950"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
393 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
394 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
395 "label": "nn_based_pred_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
396 "output_name": "nearest_neighbour_pred_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
397 "uuid": "b9761d55-2b95-4ee6-82e3-d6b3dab75b13"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
398 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
399 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
400 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
401 "output_name": "hclust_plot",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
402 "uuid": "01744525-c294-4534-814d-547e87f7cc49"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
403 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
404 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
405 "label": "model_based_pred_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
406 "output_name": "model_based_pred_bed",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
407 "uuid": "d5172432-a088-489e-828c-7e6346339441"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
408 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
409 ]
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
410 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
411 "6": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
412 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
413 "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
414 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
415 "id": 6,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
416 "input_connections": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
417 "input": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
418 "id": 5,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
419 "output_name": "clusters"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
420 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
421 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
422 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
423 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
424 "description": "runtime parameter for tool Extract Genomic DNA",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
425 "name": "interpret_features"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
426 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
427 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
428 "description": "runtime parameter for tool Extract Genomic DNA",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
429 "name": "input"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
430 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
431 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
432 "description": "runtime parameter for tool Extract Genomic DNA",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
433 "name": "reference_genome_cond"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
434 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
435 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
436 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
437 "name": "Extract Genomic DNA",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
438 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
439 {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
440 "name": "output",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
441 "type": "input"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
442 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
443 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
444 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
445 "left": 2022,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
446 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
447 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
448 "post_job_actions": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
449 "HideDatasetActionoutput": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
450 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
451 "action_type": "HideDatasetAction",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
452 "output_name": "output"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
453 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
454 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
455 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
456 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
457 "changeset_revision": "e400dcbc60d0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
458 "name": "extract_genomic_dna",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
459 "owner": "iuc",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
460 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
461 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
462 "tool_state": "{\"__page__\": null, \"output_format_cond\": \"{\\\"fasta_header_type_cond\\\": {\\\"fasta_header_type\\\": \\\"char_delimited\\\", \\\"fasta_header_delimiter\\\": \\\"underscore\\\", \\\"__current_case__\\\": 1}, \\\"output_format\\\": \\\"fasta\\\", \\\"__current_case__\\\": 0}\", \"interpret_features\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"reference_genome_cond\": \"{\\\"reference_genome\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_genome_source\\\": \\\"cached\\\", \\\"__current_case__\\\": 0}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
463 "tool_version": "3.0.3",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
464 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
465 "uuid": "fb82ac27-7e3e-4640-b743-4b96c962a53a",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
466 "workflow_outputs": []
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
467 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
468 "7": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
469 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
470 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
471 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
472 "id": 7,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
473 "input_connections": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
474 "seqdb": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
475 "id": 6,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
476 "output_name": "output"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
477 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
478 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
479 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
480 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
481 "description": "runtime parameter for tool cmsearch",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
482 "name": "seqdb"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
483 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
484 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
485 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
486 "name": "cmsearch",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
487 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
488 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
489 "name": "outfile",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
490 "type": "tabular"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
491 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
492 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
493 "name": "multiple_alignment_output",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
494 "type": "tabular"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
495 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
496 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
497 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
498 "left": 2311,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
499 "top": 340
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
500 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
501 "post_job_actions": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
502 "HideDatasetActionmultiple_alignment_output": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
503 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
504 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
505 "output_name": "multiple_alignment_output"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
506 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
507 "HideDatasetActionoutfile": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
508 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
509 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
510 "output_name": "outfile"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
511 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
512 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
513 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
514 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
515 "changeset_revision": "477d829d3250",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
516 "name": "infernal",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
517 "owner": "bgruening",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
518 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
519 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
520 "tool_state": "{\"A\": \"\\\"false\\\"\", \"verbose\": \"\\\"false\\\"\", \"notrunc\": \"\\\"false\\\"\", \"smxsize\": \"\\\"128.0\\\"\", \"cm_opts\": \"{\\\"database\\\": \\\"rfam_11_0\\\", \\\"__current_case__\\\": 0, \\\"cm_opts_selector\\\": \\\"db\\\"}\", \"__page__\": null, \"bottomonly\": \"\\\"false\\\"\", \"seqdb\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"inclusion_thresholds_opts\": \"{\\\"__current_case__\\\": 0, \\\"inclusion_thresholds_selector\\\": \\\"\\\"}\", \"__rerun_remap_job_id__\": null, \"mxsize\": \"\\\"128.0\\\"\", \"anytrunc\": \"\\\"false\\\"\", \"acyk\": \"\\\"false\\\"\", \"acceleration_huristics\": \"{\\\"__current_case__\\\": 3, \\\"acceleration_huristics_selector\\\": \\\"--default\\\"}\", \"reporting_thresholds_opts\": \"{\\\"reporting_thresholds_selector\\\": \\\"\\\", \\\"__current_case__\\\": 0}\", \"cyk\": \"\\\"false\\\"\", \"Z\": \"\\\"\\\"\", \"model_thresholds\": \"{\\\"cut_ga\\\": \\\"false\\\", \\\"cut_nc\\\": \\\"false\\\", \\\"cut_tc\\\": \\\"false\\\"}\", \"g\": \"\\\"false\\\"\", \"nonull3\": \"\\\"false\\\"\", \"toponly\": \"\\\"false\\\"\", \"noali\": \"\\\"false\\\"\"}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
521 "tool_version": "1.1.2.0",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
522 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
523 "uuid": "842f09a0-b91c-4a9b-a3a5-019f0fda1aba",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
524 "workflow_outputs": []
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
525 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
526 "8": {
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
527 "annotation": "",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
528 "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
529 "errors": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
530 "id": 8,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
531 "input_connections": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
532 "tool_mode|clusters_bed": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
533 "id": 5,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
534 "output_name": "clusters"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
535 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
536 "tool_mode|cmsearch_out": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
537 "id": 7,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
538 "output_name": "outfile"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
539 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
540 "tool_mode|sim_tab_in": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
541 "id": 5,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
542 "output_name": "sim_tab_out"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
543 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
544 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
545 "inputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
546 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
547 "description": "runtime parameter for tool BlockClust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
548 "name": "tool_mode"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
549 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
550 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
551 "description": "runtime parameter for tool BlockClust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
552 "name": "tool_mode"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
553 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
554 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
555 "description": "runtime parameter for tool BlockClust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
556 "name": "tool_mode"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
557 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
558 ],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
559 "label": null,
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
560 "name": "BlockClust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
561 "outputs": [
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
562 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
563 "name": "tags_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
564 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
565 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
566 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
567 "name": "hclust_plot",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
568 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
569 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
570 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
571 "name": "clusters",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
572 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
573 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
574 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
575 "name": "model_based_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
576 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
577 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
578 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
579 "name": "nearest_neighbour_pred_bed",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
580 "type": "bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
581 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
582 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
583 "name": "sim_tab_out",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
584 "type": "tabular"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
585 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
586 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
587 "name": "cluster_dist",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
588 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
589 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
590 {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
591 "name": "cluster_hclust",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
592 "type": "pdf"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
593 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
594 ],
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
595 "position": {
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
596 "left": 2639,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
597 "top": 338
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
598 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
599 "post_job_actions": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
600 "HideDatasetActionclusters": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
601 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
602 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
603 "output_name": "clusters"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
604 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
605 "HideDatasetActionhclust_plot": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
606 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
607 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
608 "output_name": "hclust_plot"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
609 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
610 "HideDatasetActionmodel_based_pred_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
611 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
612 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
613 "output_name": "model_based_pred_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
614 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
615 "HideDatasetActionnearest_neighbour_pred_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
616 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
617 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
618 "output_name": "nearest_neighbour_pred_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
619 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
620 "HideDatasetActionsim_tab_out": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
621 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
622 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
623 "output_name": "sim_tab_out"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
624 },
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
625 "HideDatasetActiontags_bed": {
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
626 "action_arguments": {},
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
627 "action_type": "HideDatasetAction",
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
628 "output_name": "tags_bed"
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
629 }
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
630 },
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
631 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
632 "tool_shed_repository": {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
633 "changeset_revision": "aab6cf87b40a",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
634 "name": "blockclust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
635 "owner": "rnateam",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
636 "tool_shed": "toolshed.g2.bx.psu.edu"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
637 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
638 "tool_state": "{\"tool_mode\": \"{\\\"cmsearch_out\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"operation\\\": \\\"post\\\", \\\"clusters_bed\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 2, \\\"sim_tab_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
639 "tool_version": "1.1.0",
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
640 "type": "tool",
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
641 "uuid": "dfdaf591-1d6f-45f0-bf05-4fac5680155e",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
642 "workflow_outputs": [
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
643 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
644 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
645 "output_name": "cluster_hclust",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
646 "uuid": "75860090-3020-4281-9887-b73389b9c207"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
647 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
648 {
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
649 "label": null,
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
650 "output_name": "cluster_dist",
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
651 "uuid": "c749ddcc-628b-4e46-a61d-dfbe00901964"
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
652 }
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
653 ]
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
654 }
11
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
655 },
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
656 "tags": [],
1e6d0af8c450 blockclust workflows 1.1.0
rnateam
parents: 0
diff changeset
657 "uuid": "a60be50d-44e1-4fb5-90a0-3b849ceaf3e3"
0
b2040467dad2 Uploaded
rnateam
parents:
diff changeset
658 }