Mercurial > repos > rnateam > blockclust_workflow

comparison blockclust_workflow_clustering.ga @ 5:47a0bcb1188d draft

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Uploaded
author rnateam
date Tue, 23 Sep 2014 09:11:33 -0400
parents 59e321cafca7
children 36069107a62a
comparison
equal deleted inserted replaced
4:59e321cafca7 5:47a0bcb1188d
1 { 1 {
2 "a_galaxy_workflow": "true", 2 "a_galaxy_workflow": "true",
3 "annotation": "Until clustering step. No post processing included.", 3 "annotation": "Until clustering step. No post processing included.",
4 "format-version": "0.1", 4 "format-version": "0.1",
5 "name": "BlockClustWorkflow_clustering", 5 "name": "imported: BlockClustWorkflow_clustering",
6 "steps": { 6 "steps": {
7 "0": { 7 "0": {
8 "annotation": "", 8 "annotation": "",
9 "id": 0, 9 "id": 0,
10 "input_connections": {}, 10 "input_connections": {},
16 ], 16 ],
17 "name": "Input dataset", 17 "name": "Input dataset",
18 "outputs": [], 18 "outputs": [],
19 "position": { 19 "position": {
20 "left": 217, 20 "left": 217,
21 "top": 289.5 21 "top": 334.5
22 }, 22 },
23 "tool_errors": null, 23 "tool_errors": null,
24 "tool_id": null, 24 "tool_id": null,
25 "tool_state": "{\"name\": \"Input BAM file\"}", 25 "tool_state": "{\"name\": \"Input BAM file\"}",
26 "tool_version": null, 26 "tool_version": null,
72 "type": "pdf" 72 "type": "pdf"
73 } 73 }
74 ], 74 ],
75 "position": { 75 "position": {
76 "left": 446.5, 76 "left": 446.5,
77 "top": 246.5 77 "top": 291.5
78 }, 78 },
79 "post_job_actions": { 79 "post_job_actions": {
80 "HideDatasetActioncluster_dist": { 80 "HideDatasetActioncluster_dist": {
81 "action_arguments": {}, 81 "action_arguments": {},
82 "action_type": "HideDatasetAction", 82 "action_type": "HideDatasetAction",
142 "type": "input" 142 "type": "input"
143 } 143 }
144 ], 144 ],
145 "position": { 145 "position": {
146 "left": 740, 146 "left": 740,
147 "top": 278 147 "top": 323
148 }, 148 },
149 "post_job_actions": { 149 "post_job_actions": {
150 "HideDatasetActionout_file1": { 150 "HideDatasetActionout_file1": {
151 "action_arguments": {}, 151 "action_arguments": {},
152 "action_type": "HideDatasetAction", 152 "action_type": "HideDatasetAction",
177 "type": "tabular" 177 "type": "tabular"
178 } 178 }
179 ], 179 ],
180 "position": { 180 "position": {
181 "left": 961.5, 181 "left": 961.5,
182 "top": 226.5 182 "top": 271.5
183 }, 183 },
184 "post_job_actions": { 184 "post_job_actions": {
185 "HideDatasetActionoutput": { 185 "HideDatasetActionoutput": {
186 "action_arguments": {}, 186 "action_arguments": {},
187 "action_type": "HideDatasetAction", 187 "action_type": "HideDatasetAction",
206 }, 206 },
207 "inputs": [ 207 "inputs": [
208 { 208 {
209 "description": "runtime parameter for tool BlockClust", 209 "description": "runtime parameter for tool BlockClust",
210 "name": "tool_mode" 210 "name": "tool_mode"
211 },
212 {
213 "description": "runtime parameter for tool BlockClust",
214 "name": "tool_mode"
211 } 215 }
212 ], 216 ],
213 "name": "BlockClust", 217 "name": "BlockClust",
214 "outputs": [ 218 "outputs": [
215 { 219 {
245 "type": "pdf" 249 "type": "pdf"
246 } 250 }
247 ], 251 ],
248 "position": { 252 "position": {
249 "left": 1268.5, 253 "left": 1268.5,
250 "top": 260.5 254 "top": 305.5
251 }, 255 },
252 "post_job_actions": { 256 "post_job_actions": {
253 "HideDatasetActioncluster_dist": { 257 "HideDatasetActioncluster_dist": {
254 "action_arguments": {}, 258 "action_arguments": {},
255 "action_type": "HideDatasetAction", 259 "action_type": "HideDatasetAction",
271 "output_name": "tags_bed" 275 "output_name": "tags_bed"
272 } 276 }
273 }, 277 },
274 "tool_errors": null, 278 "tool_errors": null,
275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 279 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0",
276 "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 280 "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
277 "tool_version": "1.0.0", 281 "tool_version": "1.0.0",
278 "type": "tool", 282 "type": "tool",
279 "user_outputs": [] 283 "user_outputs": []
280 } 284 }
281 } 285 }