Mercurial > repos > rnateam > blockclust_workflow

comparison blockclust_workflow_complete.ga @ 4:59e321cafca7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author rnateam
date Tue, 23 Sep 2014 08:33:55 -0400
parents 0c393c9d3756
children 47a0bcb1188d
comparison
equal deleted inserted replaced
3:a1c846233094 4:59e321cafca7
15 } 15 }
16 ], 16 ],
17 "name": "Input dataset", 17 "name": "Input dataset",
18 "outputs": [], 18 "outputs": [],
19 "position": { 19 "position": {
20 "left": 217, 20 "left": 240,
21 "top": 276.5 21 "top": 315.5
22 }, 22 },
23 "tool_errors": null, 23 "tool_errors": null,
24 "tool_id": null, 24 "tool_id": null,
25 "tool_state": "{\"name\": \"Input BAM file\"}", 25 "tool_state": "{\"name\": \"Input BAM file\"}",
26 "tool_version": null, 26 "tool_version": null,
71 "name": "cluster_hclust", 71 "name": "cluster_hclust",
72 "type": "pdf" 72 "type": "pdf"
73 } 73 }
74 ], 74 ],
75 "position": { 75 "position": {
76 "left": 446.5, 76 "left": 469.5,
77 "top": 233.5 77 "top": 272.5
78 }, 78 },
79 "post_job_actions": { 79 "post_job_actions": {
80 "HideDatasetActioncluster_dist": { 80 "HideDatasetActioncluster_dist": {
81 "action_arguments": {}, 81 "action_arguments": {},
82 "action_type": "HideDatasetAction", 82 "action_type": "HideDatasetAction",
141 "name": "out_file1", 141 "name": "out_file1",
142 "type": "input" 142 "type": "input"
143 } 143 }
144 ], 144 ],
145 "position": { 145 "position": {
146 "left": 740, 146 "left": 763,
147 "top": 265 147 "top": 304
148 }, 148 },
149 "post_job_actions": { 149 "post_job_actions": {
150 "HideDatasetActionout_file1": { 150 "HideDatasetActionout_file1": {
151 "action_arguments": {}, 151 "action_arguments": {},
152 "action_type": "HideDatasetAction", 152 "action_type": "HideDatasetAction",
176 "name": "output", 176 "name": "output",
177 "type": "tabular" 177 "type": "tabular"
178 } 178 }
179 ], 179 ],
180 "position": { 180 "position": {
181 "left": 961.5, 181 "left": 984.5,
182 "top": 213.5 182 "top": 252.5
183 }, 183 },
184 "post_job_actions": { 184 "post_job_actions": {
185 "HideDatasetActionoutput": { 185 "HideDatasetActionoutput": {
186 "action_arguments": {}, 186 "action_arguments": {},
187 "action_type": "HideDatasetAction", 187 "action_type": "HideDatasetAction",
244 "name": "cluster_hclust", 244 "name": "cluster_hclust",
245 "type": "pdf" 245 "type": "pdf"
246 } 246 }
247 ], 247 ],
248 "position": { 248 "position": {
249 "left": 1220.5, 249 "left": 1287.5,
250 "top": 369.5 250 "top": 294.5
251 }, 251 },
252 "post_job_actions": { 252 "post_job_actions": {
253 "HideDatasetActioncluster_dist": { 253 "HideDatasetActioncluster_dist": {
254 "action_arguments": {}, 254 "action_arguments": {},
255 "action_type": "HideDatasetAction", 255 "action_type": "HideDatasetAction",
271 "output_name": "tags_bed" 271 "output_name": "tags_bed"
272 } 272 }
273 }, 273 },
274 "tool_errors": null, 274 "tool_errors": null,
275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0",
276 "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 276 "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
277 "tool_version": "1.0.0", 277 "tool_version": "1.0.0",
278 "type": "tool", 278 "type": "tool",
279 "user_outputs": [] 279 "user_outputs": []
280 }, 280 },
281 "5": { 281 "5": {
294 "name": "out_file1", 294 "name": "out_file1",
295 "type": "input" 295 "type": "input"
296 } 296 }
297 ], 297 ],
298 "position": { 298 "position": {
299 "left": 1562, 299 "left": 1588,
300 "top": 204 300 "top": 232
301 }, 301 },
302 "post_job_actions": { 302 "post_job_actions": {
303 "HideDatasetActionout_file1": { 303 "HideDatasetActionout_file1": {
304 "action_arguments": {}, 304 "action_arguments": {},
305 "action_type": "HideDatasetAction", 305 "action_type": "HideDatasetAction",
338 "name": "multiple_alignment_output", 338 "name": "multiple_alignment_output",
339 "type": "tabular" 339 "type": "tabular"
340 } 340 }
341 ], 341 ],
342 "position": { 342 "position": {
343 "left": 1857, 343 "left": 1880,
344 "top": 256.5 344 "top": 295.5
345 }, 345 },
346 "post_job_actions": { 346 "post_job_actions": {
347 "HideDatasetActionmultiple_alignment_output": { 347 "HideDatasetActionmultiple_alignment_output": {
348 "action_arguments": {}, 348 "action_arguments": {},
349 "action_type": "HideDatasetAction", 349 "action_type": "HideDatasetAction",
366 "annotation": "", 366 "annotation": "",
367 "id": 7, 367 "id": 7,
368 "input_connections": { 368 "input_connections": {
369 "tool_mode|clusters_bed": { 369 "tool_mode|clusters_bed": {
370 "id": 4, 370 "id": 4,
371 "output_name": "clusters" 371 "output_name": "model_based_pred_bed"
372 }, 372 },
373 "tool_mode|cmsearch_out": { 373 "tool_mode|cmsearch_out": {
374 "id": 6, 374 "id": 6,
375 "output_name": "outfile" 375 "output_name": "outfile"
376 }, 376 },
414 "name": "cluster_hclust", 414 "name": "cluster_hclust",
415 "type": "pdf" 415 "type": "pdf"
416 } 416 }
417 ], 417 ],
418 "position": { 418 "position": {
419 "left": 2165.5, 419 "left": 2184.5,
420 "top": 313.5 420 "top": 338.5
421 }, 421 },
422 "post_job_actions": { 422 "post_job_actions": {
423 "HideDatasetActionclusters": { 423 "HideDatasetActionclusters": {
424 "action_arguments": {}, 424 "action_arguments": {},
425 "action_type": "HideDatasetAction", 425 "action_type": "HideDatasetAction",