# HG changeset patch # User rnateam # Date 1544456784 18000 # Node ID 1e6d0af8c45015dba2d29238e8cdddb7e93cb079 # Parent 69fd3011b1a9f13a81d7588644e91e4f6e2df123 blockclust workflows 1.1.0 diff -r 69fd3011b1a9 -r 1e6d0af8c450 blockclust_workflow.ga --- a/blockclust_workflow.ga Mon Dec 10 10:45:37 2018 -0500 +++ b/blockclust_workflow.ga Mon Dec 10 10:46:24 2018 -0500 @@ -2,41 +2,102 @@ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", - "name": "BlockClustWorkflow", + "name": "blockclust 1.1.0 complete", "steps": { "0": { "annotation": "", + "content_id": null, + "errors": null, "id": 0, "input_connections": {}, - "inputs": [ - { - "description": "", - "name": "Input BAM file" - } - ], + "inputs": [], + "label": "blockclust_input", "name": "Input dataset", "outputs": [], "position": { - "left": 267, - "top": 257.5 + "left": 200, + "top": 338 }, - "tool_errors": null, "tool_id": null, - "tool_state": "{\"name\": \"Input BAM file\"}", + "tool_state": "{}", "tool_version": null, "type": "data_input", - "user_outputs": [] + "uuid": "b6e23dd8-46ca-4bd6-87f3-2f6b741b459b", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "d8c12432-a0db-4cba-a815-aba6a2de9626" + } + ] }, "1": { "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2", + "errors": null, "id": 1, "input_connections": { - "tool_mode|reads_bam": { + "input1": { "id": 0, "output_name": "output" } }, - "inputs": [], + "inputs": [ + { + "description": "runtime parameter for tool Samtools sort", + "name": "input1" + } + ], + "label": null, + "name": "Samtools sort", + "outputs": [ + { + "name": "output1", + "type": "bam" + } + ], + "position": { + "left": 460, + "top": 338 + }, + "post_job_actions": {}, + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2", + "tool_shed_repository": { + "changeset_revision": "f56bdb93ae58", + "name": "samtools_sort", + "owner": "devteam", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"prim_key_cond\": \"{\\\"prim_key_select\\\": \\\"\\\", \\\"__current_case__\\\": 0}\"}", + "tool_version": "2.0.2", + "type": "tool", + "uuid": "327e9b59-6d4e-482e-bcdf-c7cc5d8505c9", + "workflow_outputs": [ + { + "label": null, + "output_name": "output1", + "uuid": "22295821-a765-4e6c-804f-6c710e26923f" + } + ] + }, + "2": { + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "errors": null, + "id": 2, + "input_connections": { + "tool_mode|reads_bam": { + "id": 1, + "output_name": "output1" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool BlockClust", + "name": "tool_mode" + } + ], + "label": null, "name": "BlockClust", "outputs": [ { @@ -73,8 +134,8 @@ } ], "position": { - "left": 524, - "top": 323 + "left": 788, + "top": 338 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -111,90 +172,133 @@ "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "sim_tab_out" - }, - "HideDatasetActiontags_bed": { - "action_arguments": {}, - "action_type": "HideDatasetAction", + } + }, + "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "tool_shed_repository": { + "changeset_revision": "aab6cf87b40a", + "name": "blockclust", + "owner": "rnateam", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"tool_mode\": \"{\\\"operation\\\": \\\"pre\\\", \\\"reads_bam\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", + "tool_version": "1.1.0", + "type": "tool", + "uuid": "fd3043d3-609e-4303-bcb5-448cb749a319", + "workflow_outputs": [ + { + "label": "tags_bed", + "output_name": "tags_bed", + "uuid": "39f8722a-8444-42f8-8104-f81201804c9c" + } + ] + }, + "3": { + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1", + "errors": null, + "id": 3, + "input_connections": { + "infile": { + "id": 2, "output_name": "tags_bed" } }, - "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", - "tool_state": "{\"tool_mode\": \"{\\\"operation\\\": \\\"pre\\\", \\\"reads_bam\\\": null, \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"mode\": \"{\\\"operation\\\": \\\"pre\\\", \\\"reads_bam\\\": null, \\\"__current_case__\\\": 0}\", \"__page__\": 0}", - "tool_version": "1.0.0", - "type": "tool", - "user_outputs": [] - }, - "2": { - "annotation": "", - "id": 2, - "input_connections": { - "input": { - "id": 1, - "output_name": "tags_bed" + "inputs": [ + { + "description": "runtime parameter for tool Sort", + "name": "infile" } - }, - "inputs": [], + ], + "label": null, "name": "Sort", "outputs": [ { - "name": "out_file1", + "name": "outfile", "type": "input" } ], "position": { - "left": 797, - "top": 355 + "left": 1116, + "top": 338 }, "post_job_actions": { - "HideDatasetActionout_file1": { + "HideDatasetActionoutfile": { "action_arguments": {}, "action_type": "HideDatasetAction", - "output_name": "out_file1" + "output_name": "outfile" } }, - "tool_errors": null, - "tool_id": "sort1", - "tool_state": "{\"__page__\": 0, \"style\": \"\\\"alpha\\\"\", \"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"__rerun_remap_job_id__\": null, \"order\": \"\\\"ASC\\\"\", \"input\": \"null\", \"column_set\": \"[{\\\"other_order\\\": \\\"ASC\\\", \\\"__index__\\\": 0, \\\"other_column\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"6\\\"}, \\\"other_style\\\": \\\"alpha\\\"}, {\\\"other_order\\\": \\\"ASC\\\", \\\"__index__\\\": 1, \\\"other_column\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}, \\\"other_style\\\": \\\"num\\\"}, {\\\"other_order\\\": \\\"ASC\\\", \\\"__index__\\\": 2, \\\"other_column\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"3\\\"}, \\\"other_style\\\": \\\"num\\\"}]\"}", - "tool_version": "1.0.3", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1", + "tool_shed_repository": { + "changeset_revision": "74a8bef53a00", + "name": "text_processing", + "owner": "bgruening", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"sortkeys\": \"[{\\\"column\\\": \\\"1\\\", \\\"__index__\\\": 0, \\\"style\\\": \\\"\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"6\\\", \\\"__index__\\\": 1, \\\"style\\\": \\\"\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"2\\\", \\\"__index__\\\": 2, \\\"style\\\": \\\"n\\\", \\\"order\\\": \\\"\\\"}, {\\\"column\\\": \\\"3\\\", \\\"__index__\\\": 3, \\\"style\\\": \\\"n\\\", \\\"order\\\": \\\"\\\"}]\", \"__page__\": null, \"ignore_case\": \"\\\"true\\\"\", \"__rerun_remap_job_id__\": null, \"header\": \"\\\"0\\\"\", \"unique\": \"\\\"false\\\"\", \"infile\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", + "tool_version": "1.1.1", "type": "tool", - "user_outputs": [] + "uuid": "ecaa7fb8-a10a-457c-9ce0-3b7f0647d1b4", + "workflow_outputs": [] }, - "3": { + "4": { "annotation": "", - "id": 3, + "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1.2", + "errors": null, + "id": 4, "input_connections": { "input": { - "id": 2, - "output_name": "out_file1" + "id": 3, + "output_name": "outfile" } }, - "inputs": [], + "inputs": [ + { + "description": "runtime parameter for tool blockbuster", + "name": "input" + } + ], + "label": null, "name": "blockbuster", "outputs": [ { "name": "output", - "type": "tabular" + "type": "bed" } ], "position": { - "left": 970, - "top": 225 + "left": 1376, + "top": 338 }, "post_job_actions": {}, - "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1", - "tool_state": "{\"distance\": \"\\\"40\\\"\", \"scale\": \"\\\"0.5\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"print\": \"\\\"2\\\"\", \"tagFilter\": \"\\\"0\\\"\", \"merge\": \"\\\"0\\\"\", \"minBlockHeight\": \"\\\"1.0\\\"\", \"input\": \"null\", \"minClusterHeight\": \"\\\"50.0\\\"\"}", - "tool_version": "0.1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/0.1.2", + "tool_shed_repository": { + "changeset_revision": "7c7ff7a3503f", + "name": "blockbuster", + "owner": "rnateam", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"distance\": \"\\\"40\\\"\", \"scale\": \"\\\"0.5\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"print\": \"\\\"bbf_reads\\\"\", \"tagFilter\": \"\\\"0\\\"\", \"merge\": \"\\\"0\\\"\", \"minBlockHeight\": \"\\\"1.0\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"minClusterHeight\": \"\\\"50.0\\\"\"}", + "tool_version": "0.1.2", "type": "tool", - "user_outputs": [] + "uuid": "8a3db40c-ae03-49ca-b47c-559ac455d712", + "workflow_outputs": [ + { + "label": "blockbuster_out", + "output_name": "output", + "uuid": "95c21ce9-e988-44b9-978e-10a27b74d18e" + } + ] }, - "4": { + "5": { "annotation": "", - "id": 4, + "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "errors": null, + "id": 5, "input_connections": { "tool_mode|input_bbo": { - "id": 3, + "id": 4, "output_name": "output" } }, @@ -202,8 +306,13 @@ { "description": "runtime parameter for tool BlockClust", "name": "tool_mode" + }, + { + "description": "runtime parameter for tool BlockClust", + "name": "tool_mode" } ], + "label": null, "name": "BlockClust", "outputs": [ { @@ -240,8 +349,8 @@ } ], "position": { - "left": 1232, - "top": 321 + "left": 1694, + "top": 338 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -254,16 +363,6 @@ "action_type": "HideDatasetAction", "output_name": "cluster_hclust" }, - "HideDatasetActionclusters": { - "action_arguments": {}, - "action_type": "HideDatasetAction", - "output_name": "clusters" - }, - "HideDatasetActionnearest_neighbour_pred_bed": { - "action_arguments": {}, - "action_type": "HideDatasetAction", - "output_name": "nearest_neighbour_pred_bed" - }, "HideDatasetActionsim_tab_out": { "action_arguments": {}, "action_type": "HideDatasetAction", @@ -275,59 +374,116 @@ "output_name": "tags_bed" } }, - "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", - "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"mode\": \"{\\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__page__\": 0}", - "tool_version": "1.0.0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "tool_shed_repository": { + "changeset_revision": "aab6cf87b40a", + "name": "blockclust", + "owner": "rnateam", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"enable_pred\\\": \\\"yes\\\"}, \\\"nochr\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"analysis\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", + "tool_version": "1.1.0", "type": "tool", - "user_outputs": [] + "uuid": "e41a16eb-4edd-4f9e-b615-44d0c2988b63", + "workflow_outputs": [ + { + "label": "clusters_bed", + "output_name": "clusters", + "uuid": "287b4bae-55a1-4f38-b1c3-62ae60b4d950" + }, + { + "label": "nn_based_pred_bed", + "output_name": "nearest_neighbour_pred_bed", + "uuid": "b9761d55-2b95-4ee6-82e3-d6b3dab75b13" + }, + { + "label": null, + "output_name": "hclust_plot", + "uuid": "01744525-c294-4534-814d-547e87f7cc49" + }, + { + "label": "model_based_pred_bed", + "output_name": "model_based_pred_bed", + "uuid": "d5172432-a088-489e-828c-7e6346339441" + } + ] }, - "5": { + "6": { "annotation": "", - "id": 5, + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3", + "errors": null, + "id": 6, "input_connections": { "input": { - "id": 4, + "id": 5, "output_name": "clusters" } }, - "inputs": [], + "inputs": [ + { + "description": "runtime parameter for tool Extract Genomic DNA", + "name": "interpret_features" + }, + { + "description": "runtime parameter for tool Extract Genomic DNA", + "name": "input" + }, + { + "description": "runtime parameter for tool Extract Genomic DNA", + "name": "reference_genome_cond" + } + ], + "label": null, "name": "Extract Genomic DNA", "outputs": [ { - "name": "out_file1", + "name": "output", "type": "input" } ], "position": { - "left": 1495, - "top": 248 + "left": 2022, + "top": 338 }, "post_job_actions": { - "HideDatasetActionout_file1": { + "HideDatasetActionoutput": { "action_arguments": {}, "action_type": "HideDatasetAction", - "output_name": "out_file1" + "output_name": "output" } }, - "tool_errors": null, - "tool_id": "Extract genomic DNA 1", - "tool_state": "{\"out_format\": \"\\\"fasta\\\"\", \"__page__\": 0, \"interpret_features\": \"\\\"yes\\\"\", \"__rerun_remap_job_id__\": null, \"seq_source\": \"{\\\"index_source\\\": \\\"cached\\\", \\\"__current_case__\\\": 0}\", \"input\": \"null\"}", - "tool_version": "2.2.3", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3", + "tool_shed_repository": { + "changeset_revision": "e400dcbc60d0", + "name": "extract_genomic_dna", + "owner": "iuc", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"__page__\": null, \"output_format_cond\": \"{\\\"fasta_header_type_cond\\\": {\\\"fasta_header_type\\\": \\\"char_delimited\\\", \\\"fasta_header_delimiter\\\": \\\"underscore\\\", \\\"__current_case__\\\": 1}, \\\"output_format\\\": \\\"fasta\\\", \\\"__current_case__\\\": 0}\", \"interpret_features\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"reference_genome_cond\": \"{\\\"reference_genome\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_genome_source\\\": \\\"cached\\\", \\\"__current_case__\\\": 0}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", + "tool_version": "3.0.3", "type": "tool", - "user_outputs": [] + "uuid": "fb82ac27-7e3e-4640-b743-4b96c962a53a", + "workflow_outputs": [] }, - "6": { + "7": { "annotation": "", - "id": 6, + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0", + "errors": null, + "id": 7, "input_connections": { "seqdb": { - "id": 5, - "output_name": "out_file1" + "id": 6, + "output_name": "output" } }, - "inputs": [], - "name": "Search covariance model(s)", + "inputs": [ + { + "description": "runtime parameter for tool cmsearch", + "name": "seqdb" + } + ], + "label": null, + "name": "cmsearch", "outputs": [ { "name": "outfile", @@ -339,8 +495,8 @@ } ], "position": { - "left": 1753, - "top": 247 + "left": 2311, + "top": 340 }, "post_job_actions": { "HideDatasetActionmultiple_alignment_output": { @@ -354,31 +510,53 @@ "output_name": "outfile" } }, - "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.0.2", - "tool_state": "{\"A\": \"\\\"False\\\"\", \"nohmm\": \"\\\"False\\\"\", \"--acyk\": \"\\\"False\\\"\", \"bottomonly\": \"\\\"False\\\"\", \"g\": \"\\\"False\\\"\", \"inclusion_thresholds_opts\": \"{\\\"inclusion_thresholds_selector\\\": \\\"\\\", \\\"__current_case__\\\": 3}\", \"__page__\": 0, \"max\": \"\\\"False\\\"\", \"notrunc\": \"\\\"False\\\"\", \"mid\": \"\\\"False\\\"\", \"seqdb\": \"null\", \"toponly\": \"\\\"False\\\"\", \"cm_opts\": \"{\\\"database\\\": null, \\\"__current_case__\\\": 0, \\\"cm_opts_selector\\\": \\\"db\\\"}\", \"reporting_thresholds_opts\": \"{\\\"reporting_thresholds_selector\\\": \\\"\\\", \\\"__current_case__\\\": 3}\", \"cyk\": \"\\\"False\\\"\", \"__rerun_remap_job_id__\": null}", - "tool_version": "1.1.0.2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0", + "tool_shed_repository": { + "changeset_revision": "477d829d3250", + "name": "infernal", + "owner": "bgruening", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"A\": \"\\\"false\\\"\", \"verbose\": \"\\\"false\\\"\", \"notrunc\": \"\\\"false\\\"\", \"smxsize\": \"\\\"128.0\\\"\", \"cm_opts\": \"{\\\"database\\\": \\\"rfam_11_0\\\", \\\"__current_case__\\\": 0, \\\"cm_opts_selector\\\": \\\"db\\\"}\", \"__page__\": null, \"bottomonly\": \"\\\"false\\\"\", \"seqdb\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"inclusion_thresholds_opts\": \"{\\\"__current_case__\\\": 0, \\\"inclusion_thresholds_selector\\\": \\\"\\\"}\", \"__rerun_remap_job_id__\": null, \"mxsize\": \"\\\"128.0\\\"\", \"anytrunc\": \"\\\"false\\\"\", \"acyk\": \"\\\"false\\\"\", \"acceleration_huristics\": \"{\\\"__current_case__\\\": 3, \\\"acceleration_huristics_selector\\\": \\\"--default\\\"}\", \"reporting_thresholds_opts\": \"{\\\"reporting_thresholds_selector\\\": \\\"\\\", \\\"__current_case__\\\": 0}\", \"cyk\": \"\\\"false\\\"\", \"Z\": \"\\\"\\\"\", \"model_thresholds\": \"{\\\"cut_ga\\\": \\\"false\\\", \\\"cut_nc\\\": \\\"false\\\", \\\"cut_tc\\\": \\\"false\\\"}\", \"g\": \"\\\"false\\\"\", \"nonull3\": \"\\\"false\\\"\", \"toponly\": \"\\\"false\\\"\", \"noali\": \"\\\"false\\\"\"}", + "tool_version": "1.1.2.0", "type": "tool", - "user_outputs": [] + "uuid": "842f09a0-b91c-4a9b-a3a5-019f0fda1aba", + "workflow_outputs": [] }, - "7": { + "8": { "annotation": "", - "id": 7, + "content_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "errors": null, + "id": 8, "input_connections": { "tool_mode|clusters_bed": { - "id": 4, + "id": 5, "output_name": "clusters" }, "tool_mode|cmsearch_out": { - "id": 6, + "id": 7, "output_name": "outfile" }, "tool_mode|sim_tab_in": { - "id": 4, + "id": 5, "output_name": "sim_tab_out" } }, - "inputs": [], + "inputs": [ + { + "description": "runtime parameter for tool BlockClust", + "name": "tool_mode" + }, + { + "description": "runtime parameter for tool BlockClust", + "name": "tool_mode" + }, + { + "description": "runtime parameter for tool BlockClust", + "name": "tool_mode" + } + ], + "label": null, "name": "BlockClust", "outputs": [ { @@ -415,8 +593,8 @@ } ], "position": { - "left": 2049, - "top": 433 + "left": 2639, + "top": 338 }, "post_job_actions": { "HideDatasetActionclusters": { @@ -450,12 +628,31 @@ "output_name": "tags_bed" } }, - "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", - "tool_state": "{\"tool_mode\": \"{\\\"cmsearch_out\\\": null, \\\"operation\\\": \\\"post\\\", \\\"clusters_bed\\\": null, \\\"__current_case__\\\": 2, \\\"sim_tab_in\\\": null}\", \"__rerun_remap_job_id__\": null, \"mode\": \"{\\\"cmsearch_out\\\": null, \\\"operation\\\": \\\"post\\\", \\\"clusters_bed\\\": null, \\\"__current_case__\\\": 2, \\\"sim_tab_in\\\": null}\", \"__page__\": 0}", - "tool_version": "1.0.0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.1.0", + "tool_shed_repository": { + "changeset_revision": "aab6cf87b40a", + "name": "blockclust", + "owner": "rnateam", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"tool_mode\": \"{\\\"cmsearch_out\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"operation\\\": \\\"post\\\", \\\"clusters_bed\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 2, \\\"sim_tab_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", + "tool_version": "1.1.0", "type": "tool", - "user_outputs": [] + "uuid": "dfdaf591-1d6f-45f0-bf05-4fac5680155e", + "workflow_outputs": [ + { + "label": null, + "output_name": "cluster_hclust", + "uuid": "75860090-3020-4281-9887-b73389b9c207" + }, + { + "label": null, + "output_name": "cluster_dist", + "uuid": "c749ddcc-628b-4e46-a61d-dfbe00901964" + } + ] } - } + }, + "tags": [], + "uuid": "a60be50d-44e1-4fb5-90a0-3b849ceaf3e3" } \ No newline at end of file