diff test-data/cached_locally/ref.gtf @ 1:95f779f4adb7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
author rnateam
date Tue, 29 May 2018 15:08:04 -0400
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/ref.gtf	Tue May 29 15:08:04 2018 -0400
@@ -0,0 +1,17 @@
+18	pseudogene	gene	111568	112005	.	+	.	gene_id "ENSG00000263006"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene";
+18	processed_transcript	transcript	111568	112005	.	+	.	gene_id "ENSG00000263006"; transcript_id "ENST00000608049"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "ROCK1P1-003"; transcript_source "havana";
+18	protein_coding	gene	346465	347342	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+18	protein_coding	gene	371111	372102	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+18	protein_coding	gene	394601	396513	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+18	protein_coding	gene	399015	400382	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+18	protein_coding	transcript	346465	347342	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
+18	protein_coding	transcript	371111	372102	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
+18	protein_coding	transcript	394601	396513	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
+18	protein_coding	transcript	399015	400382	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
+18	protein_coding	exon	346465	347341	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; exon_id "ENSE00003544566";
+18	protein_coding	CDS	346465	347341	.	-	2	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; protein_id "ENSP00000383115";
+18	retained_intron	transcript	346465	347342	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
+18	retained_intron	transcript	371111	372102	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
+18	retained_intron	transcript	394601	396513	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
+18	retained_intron	transcript	399015	400382	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
+18	retained_intron	exon	346465	347341	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana"; exon_id "ENSE00003660294";