--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cmcv.xml	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,56 @@
+<tool id="cmcv" name="CMCV" version="@VERSION@.1">
+    <description>visualization of comparisons between RNA family models (CM)</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version" />
+    <command><![CDATA[
+    CMCV
+        @COMMON_ARGS@
+        -m $model_filepath
+        -r $cmcompare_file
+    ]]></command>
+    
+    <inputs>
+        <param name="model_filepath" type="data" format="cm" label="Input model"/>
+        <param name="cmcompare_file" type="data" format="cmcompare" label="Input comparison"/>
+        <section name="common" title="Common parameters">
+            <expand macro="common_parameters" />
+        </section>
+    </inputs>
+    <outputs>
+        <expand macro="vis_output"/>
+    </outputs>
+    <tests>
+      <test>
+        <param name="model_filepath" value="hammerheadClan.cm" />
+	<param name="cmcompare_file" value="input.cmcompare" />
+	<param name="output_format" value="pdf" />
+	<param name="model_details" value="detailed" />
+	<param name="emission_layout" value="bar" />
+	<output_collection name="output_pdfs" type="list">
+          <element name="Hammerhead_II" file="Hammerhead_II.pdf" ftype="pdf" compare="sim_size" delta="50000"/>
+	  <element name="Hammerhead_HH10" file="Hammerhead_HH10.pdf" ftype="pdf" compare="sim_size" delta="50000"/>
+	</output_collection>
+      </test>
+    </tests>
+    <help><![CDATA[
+    **CMCV -- Visualisation of RNA family model comparison**
+
+    **Input.**
+    Covariance Models in INFERNAL format, comparison file in cmcompare format.
+
+    **Output.**
+    Depending on the detail level, only nodes with index (minimal), nodes with node type and indices (simple)
+    or nodes with states, emission and transition probabilities are visualised. Nodes linked by input comparison data
+    between different families are highlighted with color labels. 
+    File in pdf,svg,png,ps format.
+
+    For more information, see     
+    .. __: https://github.com/eggzilla/cmv
+
+    ]]></help>
+    <expand macro="citations" />
+</tool>