Mercurial > repos > rnateam > data_manager_sortmerna_database_downloader
view data_manager/data_manager_sortmerna_download.xml @ 2:7d2252852f96 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit 4241c1d4b05a177bd2c74f5a139f51d4f65e0b55
author | rnateam |
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date | Tue, 13 Jun 2017 12:03:08 -0400 |
parents | 30bb49887172 |
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<tool id="data_manager_sortmerna_download" name="Download SortMeRNA" version="@VERSION@.1" tool_type="manage_data"> <description>reference databases</description> <macros> <import>macros.xml</import> </macros> <requirements> <requirement type="package" version="@VERSION@">sortmerna</requirement> <requirement type="package" version="2.13.0">requests</requirement> </requirements> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> <command><![CDATA[ python '$__tool_directory__/data_manager_sortmerna_download.py' --version @VERSION@ --jsonfile '$out_file' ]]></command> <inputs> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> </tests> <help><![CDATA[ This tool downloads the reference databases for SortMeRNA and index it ]]></help> <citations> <citation type="doi">10.1093/bioinformatics/bts611</citation> <yield /> </citations> </tool>