Mercurial > repos > rnateam > graphclust_align_cluster

annotate test-data/alignment1.rnaz.out @ 2:40371e8b6ee2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 6f9cc1c762abc9a45af9c459bd2603426148a369-dirty"
author rnateam
date Sun, 12 Sep 2021 20:11:46 +0000
parents 953353eacec2
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
1
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
2 ############################ RNAz 2.1 ##############################
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
3
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
4 Sequences: 5
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
5 Columns: 51
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
6 Reading direction: forward
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
7 Mean pairwise identity: 44.05
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
8 Shannon entropy: 1.03471
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
9 G+C content: 0.31965
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
10 Mean single sequence MFE: -5.08
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
11 Consensus MFE: -7.64
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
12 Energy contribution: -3.12
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
13 Covariance contribution: -4.52
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
14 Combinations/Pair: 2.89
1
953353eacec2 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 5fe196bd60c65c884ae1685d4b7fb33119564fa7
rnateam
parents: 0
diff changeset
15 Mean z-score: 0.21
0
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
16 Structure conservation index: 1.50
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
17 Background model: dinucleotide
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
18 Decision model: structural RNA alignment quality
1
953353eacec2 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 5fe196bd60c65c884ae1685d4b7fb33119564fa7
rnateam
parents: 0
diff changeset
19 SVM decision value: 3.54
953353eacec2 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 5fe196bd60c65c884ae1685d4b7fb33119564fa7
rnateam
parents: 0
diff changeset
20 SVM RNA-class probability: 0.999919
0
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
21 Prediction: RNA
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
22
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
23 ######################################################################
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
24
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
25 >SEQ47_2_50_+
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
26 AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC
1
953353eacec2 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 5fe196bd60c65c884ae1685d4b7fb33119564fa7
rnateam
parents: 0
diff changeset
27 .(((..-.......))-)......((((((.....)))))).......... ( -4.20, z-score = -0.01, S)
0
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
28 >SEQ42_1_50_+
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
29 GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
30 .........((((...-..)))).((((((.....)))))).......... ( -5.90, z-score = -0.43, R)
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
31 >SEQ41_1_50_+
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
32 ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
33 .........((((...-..)))).(((((.......))))).......... ( -1.80, z-score = 1.22, R)
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
34 >SEQ39_1_50_+
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
35 GUUCUUGUAGUUGAAA-UACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
36 ....(((((.......-)))))(((((((.......)))))))........ ( -7.30, z-score = -0.10, R)
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
37 >SEQ34_1_51_+
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
38 CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
39 ..............((((...((((((((.......))))).)))..)))) ( -6.20, z-score = 0.37, R)
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
40 >consensus
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
41 AUGAAUAUAGUUUAAA_UAGAACAUUAGAUUUUCAAACUAAUAGUAGAGGC
c05c83b3ef0f planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
42 .........((((......)))).(((((.......))))).......... ( -7.64 = -3.12 + -4.52)