Mercurial > repos > rnateam > graphclust_align_cluster

comparison align_cluster.xml @ 2:40371e8b6ee2 draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 6f9cc1c762abc9a45af9c459bd2603426148a369-dirty"
author rnateam
date Sun, 12 Sep 2021 20:11:46 +0000
parents 953353eacec2
children
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1:953353eacec2 2:40371e8b6ee2
100 </param> 100 </param>
101 <when value="no" /> 101 <when value="no" />
102 <when value="yes" > 102 <when value="yes" >
103 <param format="fasta" name="transcript_loci_fasta" type="data" label="Loci reference sequence" 103 <param format="fasta" name="transcript_loci_fasta" type="data" label="Loci reference sequence"
104 help="Sequence of reference species (human) for the genomic loci (precursor mRNA/lncRNA) to locate the clusters" /> 104 help="Sequence of reference species (human) for the genomic loci (precursor mRNA/lncRNA) to locate the clusters" />
105 <param name='transcript_loci_bed' type="text" value="chr1 0 100000 gene 0 +" 105 <param name='transcript_loci_bed' type="txt" value="chr1 0 100000 gene 0 +"
106 help="bed entry string of the reference transcript loci for bed/ucsc-track output. 'chrom start end name score strand' white-space separated."> 106 help="bed entry string of the reference transcript loci for bed/ucsc-track output. 'chrom start end name score strand' white-space separated.">
107 <validator type="regex" message="one-line bed string must have at least 6 entries as BED6 format (chrom start end name 0 strand) 107 <validator type="regex" message="one-line bed string must have at least 6 entries as BED6 format (chrom start end name 0 strand)
108 (space and tab allowed)">^\S+\s+[0-9]+\s+[0-9]+\s+\S+\s+\S+\s+[-+]\s*$</validator> 108 (space and tab allowed)">^\S+\s+[0-9]+\s+[0-9]+\s+\S+\s+\S+\s+[-+]\s*$</validator>
109 </param> 109 </param>
110 <param name='genome_version' value="hg38" type="text" label="reference genome assembly" 110 <param name='genome_version' value="hg38" type="txt" label="reference genome assembly"
111 help="ucsc reference genome assembly version used in the input MAF alignments (e.g. hg38, hg19, mm10). To identify the reference in clusters"> 111 help="ucsc reference genome assembly version used in the input MAF alignments (e.g. hg38, hg19, mm10). To identify the reference in clusters">
112 <validator type="regex" message="ucsc genome assembly version has an alphabet prefix and a number suffix">^[a-zA-Z]+[0-9]+$</validator> 112 <validator type="regex" message="ucsc genome assembly version has an alphabet prefix and a number suffix">^[a-zA-Z]+[0-9]+$</validator>
113 </param> 113 </param>
114 </when> 114 </when>
115 </conditional> 115 </conditional>