Mercurial > repos > rnateam > graphclust_align_cluster

comparison test-data/alignment1.rnaz.out @ 1:953353eacec2 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 5fe196bd60c65c884ae1685d4b7fb33119564fa7
author rnateam
date Sun, 28 Oct 2018 18:52:14 -0400
parents c05c83b3ef0f
children
comparison
equal deleted inserted replaced
0:c05c83b3ef0f 1:953353eacec2
10 Mean single sequence MFE: -5.08 10 Mean single sequence MFE: -5.08
11 Consensus MFE: -7.64 11 Consensus MFE: -7.64
12 Energy contribution: -3.12 12 Energy contribution: -3.12
13 Covariance contribution: -4.52 13 Covariance contribution: -4.52
14 Combinations/Pair: 2.89 14 Combinations/Pair: 2.89
15 Mean z-score: 0.22 15 Mean z-score: 0.21
16 Structure conservation index: 1.50 16 Structure conservation index: 1.50
17 Background model: dinucleotide 17 Background model: dinucleotide
18 Decision model: structural RNA alignment quality 18 Decision model: structural RNA alignment quality
19 SVM decision value: 3.53 19 SVM decision value: 3.54
20 SVM RNA-class probability: 0.999916 20 SVM RNA-class probability: 0.999919
21 Prediction: RNA 21 Prediction: RNA
22 22
23 ###################################################################### 23 ######################################################################
24 24
25 >SEQ47_2_50_+ 25 >SEQ47_2_50_+
26 AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC 26 AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC
27 .(((..-.......))-)......((((((.....)))))).......... ( -4.20, z-score = 0.02, S) 27 .(((..-.......))-)......((((((.....)))))).......... ( -4.20, z-score = -0.01, S)
28 >SEQ42_1_50_+ 28 >SEQ42_1_50_+
29 GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC 29 GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC
30 .........((((...-..)))).((((((.....)))))).......... ( -5.90, z-score = -0.43, R) 30 .........((((...-..)))).((((((.....)))))).......... ( -5.90, z-score = -0.43, R)
31 >SEQ41_1_50_+ 31 >SEQ41_1_50_+
32 ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC 32 ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC